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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1391

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL6A1 HGNC:2211 (HGNC)
1291 (Entrez Gene)
120220 (OMIM)
Chr21 q22.3 Chr21:45981749-46005049 (+)
GRCh38
Bethlem Myopathy
Ullrich Congenital Muscular Dystrophy; UCMD
P12109 (UniProt | EBI)
NM_001848 (RefSeq)
mouse Col6a1 MGI:88459 (MGI)
12833 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 39.71 cM Chr10:76708792-76726168 (-)
GRCm38
Bethlem Myopathy
OTTMUSG00000020489 (VEGA)
OTTMUSP00000022317 (VEGA)
OTTMUST00000048591 (VEGA)
rat Col6a1 294337 (Entrez Gene)
Chr20 p12 XP_001079629 (RefSeq)
chimpanzee COL6A1 450204 (Entrez Gene)
Chr21 XP_001158445 (RefSeq)
rhesus macaque LOC721855 721855 (Entrez Gene)
Chr3 XP_001118050 (RefSeq)
cattle COL6A1 511422 (Entrez Gene)
Chr1 q12-q14 NP_001137337 (RefSeq)
NM_001143865 (RefSeq)
dog COL6A1 403668 (Entrez Gene)
Chr31 XP_003434049 (RefSeq)
chicken COL6A1 396000 (Entrez Gene)
Chr7 P20785 (UniProt | EBI)
NM_205107 (RefSeq)
western clawed frog col6a1 100490352 (Entrez Gene)
ChrUN XP_002932077 (RefSeq)
zebrafish col6a1 569755 (Entrez Gene)
Chr11 XP_009304444 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory