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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CDX1 HGNC:1805 (HGNC)
1044 (Entrez Gene)
600746 (OMIM)
CDX1 (MyGene.info)
HGNC homology
Chr5 q32 Chr5:150166781-150184558 (+)
P47902 (UniProt | EBI)
NM_001804 (RefSeq)
mouse Cdx1 MGI:88360 (MGI)
12590 (Entrez Gene)
Gene Tree
HGNC homology
Chr18 34.41 cM Chr18:61018862-61036199 (-)
OTTMUSG00000037224 (VEGA)
OTTMUSP00000053587 (VEGA)
OTTMUST00000095993 (VEGA)
rat Cdx1 364883 (Entrez Gene)
Chr18 q12.1 Q05095 (UniProt | EBI)
chimpanzee CDX1 471693 (Entrez Gene)
Chr5 XP_016809521 (RefSeq)
cattle CDX1 511830 (Entrez Gene)
Chr7 NP_001095417 (RefSeq)
NM_001101947 (RefSeq)
dog CDX1 612256 (Entrez Gene)
Chr4 XP_855089 (RefSeq)
macaque, rhesus CDX1 711837 (Entrez Gene)
Chr6 XP_001108012 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.12
The Jackson Laboratory