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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
133560

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PMS2 HGNC:9122 (HGNC)
5395 (Entrez Gene)
600259 (OMIM)
Chr7 p22.2 Chr7:5973239-6009106 (-)
GRCh38
Colorectal Cancer, Hereditary Nonpolyposis, Type 4; HNPCC4
Mismatch Repair Cancer Syndrome; MMRCS
P54278 (UniProt | EBI)
NM_000535 (RefSeq)
mouse Pms2 MGI:104288 (MGI)
18861 (Entrez Gene)
Gene Tree
VISTA-Point
Chr5 82.82 cM Chr5:143909964-143937309 (+)
GRCm38
OTTMUSG00000025502 (VEGA)
OTTMUSP00000031008 (VEGA)
OTTMUST00000062771 (VEGA)
chimpanzee PMS2 463257 (Entrez Gene)
Chr7 XP_001141671 (RefSeq)
cattle PMS2 527039 (Entrez Gene)
Chr25 NP_001192867 (RefSeq)
NM_001205938 (RefSeq)
dog PMS2 479751 (Entrez Gene)
Chr6 XP_536879 (RefSeq)
western clawed frog pms2 100490402 (Entrez Gene)
ChrUN XP_002932025 (RefSeq)
zebrafish pms2 565276 (Entrez Gene)
Chr12 XP_693648 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory