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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
133052

 
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SSX4 HGNC:11338 (HGNC)
6759 (Entrez Gene)
300326 (OMIM)
ChrX p11.23 ChrX:48383527-48393343 (+)
GRCh38
O60224 (UniProt | EBI)
NM_005636 (RefSeq)
SSX4B HGNC:16880 (HGNC)
548313 (Entrez Gene)
ChrX p11.23 ChrX:48402082-48411910 (-)
GRCh38
O60224 (UniProt | EBI)
NM_001034832 (RefSeq)
mouse Ssxb2 MGI:2446771 (MGI)
387132 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 3.83 cM ChrX:8454345-8461726 (-)
GRCm38
OTTMUSG00000016666 (VEGA)
OTTMUSP00000018070 (VEGA)
OTTMUST00000040443 (VEGA)
cattle LOC100847469 100847469 (Entrez Gene)
ChrX XP_003588224 (RefSeq)
SSX5 767992 (Entrez Gene)
ChrX NP_001070521 (RefSeq)
NM_001077053 (RefSeq)
dog LOC612524 612524 (Entrez Gene)
ChrX XP_005641362 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory