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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
129611

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDHGA6 HGNC:8704 (HGNC)
56109 (Entrez Gene)
606293 (OMIM)
HGNC homology
Chr5 q31.3 Chr5:141374084-141512979 (+)
GRCh38.p7
Q9Y5G7 (UniProt | EBI)
NM_032086 (RefSeq)
mouse Pcdhga6 MGI:1935218 (MGI)
93714 (Entrez Gene)
Gene Tree
VISTA-Point
Chr18 19.57 cM Chr18:37707101-37841870 (+)
GRCm38
93714 (NCBI Gene Model)
NP_291067 (RefSeq)
NM_033589 (RefSeq)
rat Pcdhga6 102552796 (Entrez Gene)
Chr18
chimpanzee PCDHGA6 100034685 (Entrez Gene)
Chr5 Q5DRB4 (UniProt | EBI)
NM_001082564 (RefSeq)
cattle LOC100337150 100337150 (Entrez Gene)
Chr7
dog LOC100685940 100685940 (Entrez Gene)
Chr2 XP_013963404 (RefSeq)
macaque, rhesus LOC699916 699916 (Entrez Gene)
Chr6
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/04/2020
MGI 6.14
The Jackson Laboratory