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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1291

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human OPN1SW HGNC:1012 (HGNC)
611 (Entrez Gene)
613522 (OMIM)
Chr7 q32.1 Chr7:128772489-128775790 (-)
GRCh38
Tritanopia
P03999 (UniProt | EBI)
NM_001708 (RefSeq)
mouse Opn1sw MGI:99438 (MGI)
12057 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 12.36 cM Chr6:29376671-29388468 (-)
GRCm38
OTTMUSG00000022747 (VEGA)
OTTMUSP00000026075 (VEGA)
OTTMUST00000054593 (VEGA)
rat Opn1sw 81644 (Entrez Gene)
Chr4 q22 Q63652 (UniProt | EBI)
NM_031015 (RefSeq)
chimpanzee OPN1SW 472508 (Entrez Gene)
Chr7 P60015 (UniProt | EBI)
NM_001009127 (RefSeq)
rhesus macaque OPN1SW 699981 (Entrez Gene)
Chr3 XP_001091869 (RefSeq)
cattle OPN1SW 282294 (Entrez Gene)
Chr4 P51490 (UniProt | EBI)
NM_174567 (RefSeq)
dog OPN1SW 482267 (Entrez Gene)
Chr14 XP_539386 (RefSeq)
western clawed frog opn1sw 100125215 (Entrez Gene)
ChrUN NP_001119548 (RefSeq)
NM_001126076 (RefSeq)
zebrafish opn1sw1 30582 (Entrez Gene)
Chr4 Q9W6A9 (UniProt | EBI)
NM_131319 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory