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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HLA-A HGNC:4931 (HGNC)
3105 (Entrez Gene)
142800 (OMIM)
HGNC homology
Chr6 p21.3 Chr6:29942470-29945884 (+)
Severe Cutaneous Adverse Reaction, Susceptibility to
P30512 (UniProt | EBI)
NM_001242758 (RefSeq)
mouse Gm8909 MGI:3704134 (MGI)
667977 (Entrez Gene)
Gene Tree
Chr17 18.97 cM Chr17:36164443-36168537 (-)
OTTMUSG00000037026 (VEGA)
OTTMUSP00000053121 (VEGA)
OTTMUST00000095222 (VEGA)
Gm10499 MGI:3702919 (MGI)
69717 (Entrez Gene)
Gene Tree
Chr17 18.95 cM Chr17:36141758-36145923 (-)
OTTMUSG00000037348 (VEGA)
XP_006544859 (RefSeq)
OTTMUST00000096360 (VEGA)
H2-Bl MGI:892004 (MGI)
14963 (Entrez Gene)
Gene Tree
Chr17 18.89 cM Chr17:36080115-36084223 (-)
OTTMUSG00000037291 (VEGA)
OTTMUSP00000053727 (VEGA)
OTTMUST00000096210 (VEGA)
H2-D1 MGI:95896 (MGI)
14964 (Entrez Gene)
Gene Tree
Chr17 18.61 cM Chr17:35262730-35267499 (+)
OTTMUSG00000037094 (VEGA)
OTTMUSP00000053284 (VEGA)
OTTMUST00000095494 (VEGA)
H2-K1 MGI:95904 (MGI)
14972 (Entrez Gene)
Gene Tree
Chr17 17.98 cM Chr17:33996017-34000333 (-)
OTTMUSG00000037104 (VEGA)
OTTMUSP00000053302 (VEGA)
OTTMUST00000095521 (VEGA)
H2-Q1 MGI:95928 (MGI)
15006 (Entrez Gene)
Gene Tree
Chr17 18.63 cM Chr17:35320405-35325099 (+)
OTTMUSG00000037097 (VEGA)
OTTMUSP00000053287 (VEGA)
OTTMUST00000095502 (VEGA)
H2-Q2 MGI:95931 (MGI)
15013 (Entrez Gene)
Gene Tree
Chr17 18.64 cM Chr17:35342242-35346762 (+)
OTTMUSG00000037101 (VEGA)
OTTMUSP00000053292 (VEGA)
OTTMUST00000095510 (VEGA)
H2-Q4 MGI:95933 (MGI)
15015 (Entrez Gene)
Gene Tree
Chr17 18.65 cM Chr17:35379617-35385290 (+)
OTTMUSG00000037138 (VEGA)
OTTMUSP00000053359 (VEGA)
OTTMUST00000095617 (VEGA)
H2-Q6 MGI:95935 (MGI)
110557 (Entrez Gene)
Gene Tree
Chr17 18.66 cM Chr17:35424850-35430055 (+)
OTTMUSG00000037190 (VEGA)
OTTMUSP00000053519 (VEGA)
OTTMUST00000095868 (VEGA)
H2-Q7 MGI:95936 (MGI)
15018 (Entrez Gene)
Gene Tree
Chr17 18.67 cM Chr17:35439155-35443769 (+)
OTTMUSG00000037191 (VEGA)
OTTMUSP00000053520 (VEGA)
OTTMUST00000095869 (VEGA)
H2-Q10 MGI:95929 (MGI)
15007 (Entrez Gene)
Gene Tree
Chr17 18.68 cM Chr17:35470089-35474563 (+)
OTTMUSG00000037234 (VEGA)
OTTMUSP00000053596 (VEGA)
OTTMUST00000096007 (VEGA)
rat LOC100364500 100364500 (Entrez Gene)
Chr20 XP_002727425 (RefSeq)
RT1-A1 24973 (Entrez Gene)
Chr20 p12 NP_001008827 (RefSeq)
NM_001008827 (RefSeq)
RT1-A2 24974 (Entrez Gene)
Chr20 p12 NP_001008829 (RefSeq)
NM_001008829 (RefSeq)
RT1-CE1 309603 (Entrez Gene)
Chr20 p12 NP_001008832 (RefSeq)
NM_001008832 (RefSeq)
RT1-CE2 414779 (Entrez Gene)
Chr20 p12 NP_001008840 (RefSeq)
NM_001008840 (RefSeq)
RT1-CE3 414793 (Entrez Gene)
Chr20 p12 NP_001008841 (RefSeq)
NM_001008841 (RefSeq)
RT1-CE4 414783 (Entrez Gene)
Chr20 p12 NP_001008842 (RefSeq)
NM_001008842 (RefSeq)
RT1-CE5 309607 (Entrez Gene)
Chr20 p12 NP_001008843 (RefSeq)
NM_001008843 (RefSeq)
RT1-CE7 368153 (Entrez Gene)
Chr20 p12 NP_001008845 (RefSeq)
NM_001008845 (RefSeq)
RT1-CE10 414792 (Entrez Gene)
Chr20 p12 NP_001008833 (RefSeq)
NM_001008833 (RefSeq)
RT1-CE13 414790 (Entrez Gene)
Chr20 p12 NP_001008836 (RefSeq)
NM_001008836 (RefSeq)
RT1-CE16 414819 (Entrez Gene)
Chr20 NP_001008839 (RefSeq)
NM_001008839 (RefSeq)
chimpanzee PATR-A 450151 (Entrez Gene)
Chr6 P13749 (UniProt | EBI)
NM_001009058 (RefSeq)
rhesus macaque MAMU-A3 699243 (Entrez Gene)
Chr4 NP_001165309 (RefSeq)
NM_001171838 (RefSeq)
chicken BF1 693260 (Entrez Gene)
Chr16 NP_001038148 (RefSeq)
NM_001044683 (RefSeq)
BF2 425389 (Entrez Gene)
Chr16 P15979 (UniProt | EBI)
NM_001031338 (RefSeq)
LOC417057 417057 (Entrez Gene)
Chr16 XP_015157556 (RefSeq)
LOC417058 417058 (Entrez Gene)
Chr16 XP_015157552 (RefSeq)
LOC417080 417080 (Entrez Gene)
ChrUN XP_003643749 (RefSeq)
LOC417083 417083 (Entrez Gene)
Chr16 XP_015157568 (RefSeq)
LOC430600 430600 (Entrez Gene)
Chr16 XP_015157597 (RefSeq)
LOC768350 768350 (Entrez Gene)
Chr16 NP_001171648 (RefSeq)
NM_001184719 (RefSeq)
LOC769716 769716 (Entrez Gene)
Chr16 XP_001233005 (RefSeq)
LOC100857553 100857553 (Entrez Gene)
Chr16 XP_015157561 (RefSeq)
LOC100858581 100858581 (Entrez Gene)
Chr16 XP_015150521 (RefSeq)
LOC100858733 100858733 (Entrez Gene)
ChrUN XP_003643847 (RefSeq)
LOC100858943 100858943 (Entrez Gene)
LOC100859012 100859012 (Entrez Gene)
Chr16 XP_003643257 (RefSeq)
LOC100859100 100859100 (Entrez Gene)
Chr16 XP_015150554 (RefSeq)
LOC100859282 100859282 (Entrez Gene)
Chr16 XP_003642295 (RefSeq)
LOC100859374 100859374 (Entrez Gene)
Chr16 XP_015157569 (RefSeq)
LOC100859408 100859408 (Entrez Gene)
Chr16 XP_015157636 (RefSeq)
LOC100859807 100859807 (Entrez Gene)
Chr16 XP_015150557 (RefSeq)
LOC100859881 100859881 (Entrez Gene)
Chr16 XP_015157572 (RefSeq)
LOC101752075 101752075 (Entrez Gene)
ChrUN XP_004950216 (RefSeq)
MICA 417067 (Entrez Gene)
Chr16 XP_015157573 (RefSeq)
YF5 427746 (Entrez Gene)
Chr16 NP_001025846 (RefSeq)
NM_001030675 (RefSeq)
YF6 427737 (Entrez Gene)
Chr16 XP_015150529 (RefSeq)
zebrafish LOC556263 556263 (Entrez Gene)
LOC563036 563036 (Entrez Gene)
Chr3 XP_001919291 (RefSeq)
mhc1zba 791453 (Entrez Gene)
Chr1 NP_001103588 (RefSeq)
NM_001110118 (RefSeq)
mhc1zja 571647 (Entrez Gene)
Chr3 NP_001103188 (RefSeq)
NM_001109718 (RefSeq)
mhc1zka 100536229 (Entrez Gene)
ChrUN NP_001289174 (RefSeq)
NM_001302245 (RefSeq)
si:ch211-287j19.6 565708 (Entrez Gene)
Chr1 NP_001039028 (RefSeq)
NM_001045563 (RefSeq)
zgc:136614 556341 (Entrez Gene)
Chr1 NP_001077014 (RefSeq)
NM_001083545 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.02
The Jackson Laboratory