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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
128226

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HMGA1 HGNC:5010 (HGNC)
3159 (Entrez Gene)
600701 (OMIM)
Chr6 p21 Chr6:34236800-34246231 (+)
GRCh38
Diabetes Mellitus, Noninsulin-Dependent; NIDDM
P17096 (UniProt | EBI)
NM_002131 (RefSeq)
mouse Hmga1-rs1 MGI:96161 (MGI)
111241 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 84.51 cM Chr11:120762794-120764419 (+)
GRCm38
OTTMUSG00000004118 (VEGA)
OTTMUSP00000004524 (VEGA)
OTTMUST00000009297 (VEGA)
rat Hmga1 117062 (Entrez Gene)
Chr20 p12 Q8K585 (UniProt | EBI)
NM_139327 (RefSeq)
rhesus macaque HMGA1 718536 (Entrez Gene)
Chr4 NP_001253281 (RefSeq)
NM_001266352 (RefSeq)
cattle HMGA1 618849 (Entrez Gene)
Chr23 NP_001069991 (RefSeq)
NM_001076523 (RefSeq)
dog HMGA1 442946 (Entrez Gene)
Chr12 Q6URC2 (UniProt | EBI)
NM_001003387 (RefSeq)
chicken HMGA1 378795 (Entrez Gene)
ChrUN NP_989700 (RefSeq)
NM_204369 (RefSeq)
zebrafish hmga1a 406447 (Entrez Gene)
Chr23 NP_998333 (RefSeq)
NM_213168 (RefSeq)
hmga1b 768130 (Entrez Gene)
Chr6 NP_001070744 (RefSeq)
NM_001077276 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory