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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
128226

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HMGA1 HGNC:5010 (HGNC)
3159 (Entrez Gene)
600701 (OMIM)
Chr6 p21 Chr6:34236800-34246231 (+)
GRCh38
Diabetes Mellitus, Noninsulin-Dependent; NIDDM
P17096 (UniProt | EBI)
NM_002131 (RefSeq)
mouse Hmga1 MGI:96160 (MGI)
15361 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 14.5 cM Chr17:27556620-27563674 (+)
GRCm38
Diabetes Mellitus, Noninsulin-Dependent; NIDDM
OTTMUSG00000028935 (VEGA)
OTTMUSP00000036805 (VEGA)
OTTMUST00000071708 (VEGA)
Hmga1-rs1 MGI:96161 (MGI)
111241 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 84.51 cM Chr11:120762794-120764419 (+)
GRCm38
OTTMUSG00000004118 (VEGA)
OTTMUSP00000004524 (VEGA)
OTTMUST00000009297 (VEGA)
rat Hmga1 117062 (Entrez Gene)
Chr20 p12 Q8K585 (UniProt | EBI)
NM_139327 (RefSeq)
chimpanzee HMGA1 746594 (Entrez Gene)
Chr6 NP_001233425 (RefSeq)
NM_001246496 (RefSeq)
rhesus macaque LOC720502 720502 (Entrez Gene)
ChrUN XP_001115999 (RefSeq)
dog HMGA1 442946 (Entrez Gene)
Chr12 Q6URC2 (UniProt | EBI)
NM_001003387 (RefSeq)
chicken HMGA1 378795 (Entrez Gene)
ChrUN NP_989700 (RefSeq)
NM_204369 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory