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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
12712

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TRIM42 HGNC:19014 (HGNC)
287015 (Entrez Gene)
HGNC homology
Chr3 q23 Chr3:140678024-140701150 (+)
GRCh38.p7
Q8IWZ5 (UniProt | EBI)
NM_152616 (RefSeq)
mouse Trim42 MGI:1926161 (MGI)
78911 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr9 51.06 cM Chr9:97349562-97369958 (-)
GRCm38
78911 (NCBI Gene Model)
Q9D2H5 (UniProt | EBI)
NM_030219 (RefSeq)
rat Trim42 301106 (Entrez Gene)
Chr8 NP_001013977 (RefSeq)
NM_001013955 (RefSeq)
chimpanzee TRIM42 470945 (Entrez Gene)
Chr3 XP_526328 (RefSeq)
cattle TRIM42 520038 (Entrez Gene)
Chr1 XP_002685089 (RefSeq)
dog TRIM42 477094 (Entrez Gene)
Chr23 XP_022264403 (RefSeq)
chicken TRIM42 424818 (Entrez Gene)
Chr9 XP_422632 (RefSeq)
macaque, rhesus TRIM42 715465 (Entrez Gene)
Chr2 XP_001113172 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory