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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
124204

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LCT HGNC:6530 (HGNC)
3938 (Entrez Gene)
603202 (OMIM)
Chr2 q21 Chr2:135787845-135837180 (-)
GRCh38
Lactase Deficiency, Congenital
P09848 (UniProt | EBI)
NM_002299 (RefSeq)
mouse Lct MGI:104576 (MGI)
226413 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 55.8 cM Chr1:128284756-128328318 (-)
GRCm38
OTTMUSG00000030320 (VEGA)
OTTMUSP00000039304 (VEGA)
OTTMUST00000075103 (VEGA)
rat Lct 116569 (Entrez Gene)
Chr13 q12 Q02401 (UniProt | EBI)
NM_053841 (RefSeq)
rhesus macaque LCT 707761 (Entrez Gene)
Chr13 XP_001096426 (RefSeq)
cattle LCT 514332 (Entrez Gene)
Chr2 NP_001192716 (RefSeq)
NM_001205787 (RefSeq)
dog LCT 483898 (Entrez Gene)
Chr19 XP_005632060 (RefSeq)
chicken LCT 424294 (Entrez Gene)
Chr7 NP_001104816 (RefSeq)
NM_001111346 (RefSeq)
zebrafish lct 796436 (Entrez Gene)
Chr9 XP_001336765 (RefSeq)
lct 559107 (Entrez Gene)
Chr9 XP_687506 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory