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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
11875

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDGFD HGNC:30620 (HGNC)
80310 (Entrez Gene)
609673 (OMIM)
Chr11 q22.3 Chr11:103907186-104164299 (-)
GRCh38
Q9GZP0 (UniProt | EBI)
NM_025208 (RefSeq)
mouse Pdgfd MGI:1919035 (MGI)
71785 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 2.46 cM Chr9:6168612-6377519 (+)
GRCm38
71785 (NCBI Gene Model)
Q925I7 (UniProt | EBI)
NM_027924 (RefSeq)
rat Pdgfd 66018 (Entrez Gene)
Chr8 q11 Q9EQT1 (UniProt | EBI)
NM_023962 (RefSeq)
chimpanzee PDGFD 466765 (Entrez Gene)
Chr11 XP_001154475 (RefSeq)
rhesus macaque PDGFD 704310 (Entrez Gene)
Chr14 XP_001099412 (RefSeq)
cattle PDGFD 525931 (Entrez Gene)
Chr15 NP_001077175 (RefSeq)
NM_001083706 (RefSeq)
dog PDGFD 479460 (Entrez Gene)
Chr5 XP_536595 (RefSeq)
chicken PDGFD 418978 (Entrez Gene)
Chr1 NP_001264740 (RefSeq)
NM_001277811 (RefSeq)
western clawed frog LOC100492060 100492060 (Entrez Gene)
ChrUN XP_002934980 (RefSeq)
zebrafish LOC100535718 100535718 (Entrez Gene)
Chr15 XP_003200146 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory