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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
116117

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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mouse Calm1 MGI:88251 (MGI)
12313 (Entrez Gene)
Gene Tree
VISTA-Point
Chr12 50.43 cM Chr12:100199435-100209806 (+)
GRCm38
OTTMUSG00000016979 (VEGA)
OTTMUSP00000018449 (VEGA)
OTTMUST00000041175 (VEGA)
Calm2 MGI:103250 (MGI)
12314 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 57.49 cM Chr17:87433412-87446935 (-)
GRCm38
OTTMUSG00000022552 (VEGA)
OTTMUSP00000025724 (VEGA)
OTTMUST00000054017 (VEGA)
Calm3 MGI:103249 (MGI)
12315 (Entrez Gene)
Gene Tree
VISTA-Point
Chr7 9.15 cM Chr7:16915379-16924114 (-)
GRCm38
OTTMUSG00000022550 (VEGA)
OTTMUSP00000025722 (VEGA)
OTTMUST00000054012 (VEGA)
rat Calm1 24242 (Entrez Gene)
Chr6 q31-q32 P62161 (UniProt | EBI)
NM_031969 (RefSeq)
Calm2 50663 (Entrez Gene)
Chr6 q11-q12 P62161 (UniProt | EBI)
NM_017326 (RefSeq)
Calm3 24244 (Entrez Gene)
Chr1 q22 P62161 (UniProt | EBI)
NM_012518 (RefSeq)
chimpanzee CALM1 738819 (Entrez Gene)
Chr14 NP_001104289 (RefSeq)
NM_001110819 (RefSeq)
rhesus macaque LOC706351 706351 (Entrez Gene)
Chr8 XP_001094720 (RefSeq)
cattle CALM1 617095 (Entrez Gene)
Chr10 NP_001229501 (RefSeq)
NM_001242572 (RefSeq)
CALM2 100297344 (Entrez Gene)
Chr11 NP_001229516 (RefSeq)
NM_001242587 (RefSeq)
CALM3 520277 (Entrez Gene)
Chr18 NP_001039714 (RefSeq)
NM_001046249 (RefSeq)
dog CALM1 480416 (Entrez Gene)
Chr8 XP_537537 (RefSeq)
CALM2 474584 (Entrez Gene)
Chr10 XP_864645 (RefSeq)
CALM3 476428 (Entrez Gene)
Chr1 XP_533635 (RefSeq)
chicken CALM 395855 (Entrez Gene)
Chr3 P62149 (UniProt | EBI)
NM_205005 (RefSeq)
western clawed frog calm2 493522 (Entrez Gene)
ChrUN NP_001008160 (RefSeq)
NM_001008159 (RefSeq)
LOC100496298 100496298 (Entrez Gene)
ChrUN XP_002932424 (RefSeq)
zebrafish calm1a 406660 (Entrez Gene)
Chr17 NP_998516 (RefSeq)
NM_213351 (RefSeq)
calm1b 368217 (Entrez Gene)
Chr20 NP_956376 (RefSeq)
NM_200082 (RefSeq)
calm2a 336121 (Entrez Gene)
Chr13 NP_956290 (RefSeq)
NM_199996 (RefSeq)
calm2b 192322 (Entrez Gene)
Chr12 NP_999901 (RefSeq)
NM_214736 (RefSeq)
calm3a 327379 (Entrez Gene)
Chr15 NP_892012 (RefSeq)
NM_182967 (RefSeq)
calm3b 321808 (Entrez Gene)
Chr21 NP_955864 (RefSeq)
NM_199570 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory