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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
11139

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PRDM16 HGNC:14000 (HGNC)
63976 (Entrez Gene)
605557 (OMIM)
Chr1 p36.23-p33 Chr1:3068497-3438621 (+)
GRCh38
Left Ventricular Noncompaction 8; LVNC8
Q9HAZ2 (UniProt | EBI)
NM_022114 (RefSeq)
mouse Prdm16 MGI:1917923 (MGI)
70673 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 83.96 cM Chr4:154316125-154636873 (-)
GRCm38
OTTMUSG00000010585 (VEGA)
OTTMUSP00000011335 (VEGA)
OTTMUST00000024684 (VEGA)
rat Prdm16 100366024 (Entrez Gene)
Chr5 XP_003750140 (RefSeq)
chimpanzee PRDM16 457227 (Entrez Gene)
Chr1 XP_513734 (RefSeq)
cattle PRDM16 100137803 (Entrez Gene)
Chr16 XP_002694224 (RefSeq)
NM_001191296 (RefSeq)
dog PRDM16 479582 (Entrez Gene)
Chr5 XP_005620489 (RefSeq)
chicken PRDM16 419388 (Entrez Gene)
Chr21 XP_417551 (RefSeq)
western clawed frog prdm16 100485690 (Entrez Gene)
ChrUN XP_002938538 (RefSeq)
zebrafish prdm16 559174 (Entrez Gene)
Chr8 XP_001922927 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory