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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
10260

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMPD3 HGNC:14240 (HGNC)
55512 (Entrez Gene)
605777 (OMIM)
Chr16 q22.1 Chr16:68358327-68448506 (-)
GRCh38
Q9NY59 (UniProt | EBI)
NM_018667 (RefSeq)
mouse Smpd3 MGI:1927578 (MGI)
58994 (Entrez Gene)
Gene Tree
VISTA-Point
Chr8 53.12 cM Chr8:106252548-106337988 (-)
GRCm38
Osteogenesis Imperfecta, Type II
Osteogenesis Imperfecta, Type III
Pituitary Hormone Deficiency, Combined, 2; CPHD2
58994 (NCBI Gene Model)
Q9JJY3 (UniProt | EBI)
NM_021491 (RefSeq)
rat Smpd3 94338 (Entrez Gene)
Chr19 q12 O35049 (UniProt | EBI)
NM_053605 (RefSeq)
chimpanzee SMPD3 468008 (Entrez Gene)
Chr16 XP_001167790 (RefSeq)
rhesus macaque SMPD3 703384 (Entrez Gene)
Chr20 XP_001091683 (RefSeq)
cattle SMPD3 514201 (Entrez Gene)
Chr18 NP_001179292 (RefSeq)
NM_001192363 (RefSeq)
dog SMPD3 489743 (Entrez Gene)
Chr5 XP_546863 (RefSeq)
chicken SMPD3 415619 (Entrez Gene)
Chr11 XP_429344 (RefSeq)
western clawed frog smpd3 100495702 (Entrez Gene)
ChrUN XP_002939922 (RefSeq)
zebrafish smpd3 568381 (Entrez Gene)
Chr25 NP_001116222 (RefSeq)
NM_001122750 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory