About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540847
Gene symbol: Col3a1
Gene name: collagen, type III, alpha 1
Probe: RIKEN clone 9430010K02 subclone
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:8828: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:8828
TS17: genitourinary system mesenchyme Present GUDMAP:8828 strong signal
TS17: mesonephros Present Regionally restricted GUDMAP:8828 weak signal
TS17: mesonephros mesenchyme Present GUDMAP:8828 weak signal
TS17: metanephric mesenchyme Present GUDMAP:8828 weak signal
TS17: mesonephric tubule Absent GUDMAP:8828
TS17: nephric duct, mesonephric portion Absent GUDMAP:8828
TS17: nephric duct, metanephric portion Absent GUDMAP:8828
TS17: nephric duct Absent GUDMAP:8828
TS17: gonad primordium Ambiguous GUDMAP:8828

Specimen GUDMAP:8829: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:8829
TS21: mesonephros of male Present Regionally restricted GUDMAP:8829
TS21: mesonephric mesenchyme of male Present Ubiquitous GUDMAP:8829 signal can be seen surrounding the mesonephric tubules and epithelia of the nephric and paramesonephric ducts
TS21: testis Present Regionally restricted GUDMAP:8829
TS21: interstitium of the testis Present GUDMAP:8829
TS21: nephric duct of male, rest of Present GUDMAP:8829 strong signal detected which is likely to be in the mesenchyme surrounding the duct epithelium
TS21: mesenchyme of rest of paramesonephric duct of male Present GUDMAP:8829 weak signal detected in the mesenchyme surrounding the duct epithelium
TS21: mesenchyme of nephric duct of male Present GUDMAP:8829
TS21: paramesonephric duct of male, rest of Present GUDMAP:8829
TS21: mesonephric tubule of male Absent GUDMAP:8829
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:8829 weak signal detected in the mesenchyme surrounding the duct epithelium
TS21: epithelium of rest of paramesonephric duct of male Absent GUDMAP:8829
TS21: primary sex cord Absent GUDMAP:8829
TS21: germ cell of testis Absent GUDMAP:8829
TS21: coelomic epithelium of male mesonephros Ambiguous GUDMAP:8829
TS21: coelomic epithelium of testis Ambiguous GUDMAP:8829
TS21: epithelium of nephric duct of male Ambiguous GUDMAP:8829 strong signal detected in nephric duct rest of is likely to be in the mesenchyme; the epithelium is masked by the signal in the surrounding mesenchyme
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:8829 the duct epithelium is masked by the strong signal in the mesenchyme surrounding it

Specimen GUDMAP:8830: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present Regionally restricted GUDMAP:8830
TS21: mesonephros of female Present Regionally restricted GUDMAP:8830
TS21: mesonephric mesenchyme of female Present Ubiquitous GUDMAP:8830 signal can be seen surrounding the mesonephric tubules and epithelia of the nephric and paramesonephric ducts
TS21: paramesonephric duct of female, rest of Present GUDMAP:8830
TS21: mesenchyme of rest of paramesonephric duct of female Present GUDMAP:8830
TS21: mesonephric tubule of female Absent GUDMAP:8830
TS21: nephric duct of female, mesonephric portion Absent GUDMAP:8830
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:8830
TS21: epithelium of nephric duct of female Absent GUDMAP:8830
TS21: epithelium of rest of paramesonephric duct of female Absent GUDMAP:8830
TS21: ovary Absent GUDMAP:8830
TS21: coelomic epithelium of female mesonephros Ambiguous GUDMAP:8830
TS21: nephric duct of female, rest of Ambiguous GUDMAP:8830 possible signal
TS21: mesenchyme of nephric duct of female Ambiguous GUDMAP:8830 possible signal

Specimen GUDMAP:8831: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present Regionally restricted GUDMAP:8831
TS21: urogenital mesentery Present GUDMAP:8831
TS21: metanephros Present Regionally restricted GUDMAP:8831
TS21: renal interstitium Present GUDMAP:8831
TS21: cap mesenchyme Absent GUDMAP:8831
TS21: pretubular aggregate Absent GUDMAP:8831
TS21: ureteric tip Absent GUDMAP:8831
TS21: early nephron Absent GUDMAP:8831
TS21: renal capsule Ambiguous GUDMAP:8831 possible signal; signal seen on the surface of the metanephros may be the renal capsule
TS21: nephrogenic zone Ambiguous GUDMAP:8831
TS21: nephrogenic interstitium Ambiguous GUDMAP:8831

Specimen GUDMAP:8832: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the lower urinary tract is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:8832
TS21: ureter Present GUDMAP:8832
TS21: urogenital sinus Present GUDMAP:8832
TS21: primitive bladder Present GUDMAP:8832
TS21: mesenchymal layer of primitive bladder Present GUDMAP:8832
TS21: urothelium of primitive bladder Ambiguous GUDMAP:8832 structure is masked by the signal in the ureteral mesenchyme

Specimen GUDMAP:9892: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:9892
TS23: metanephros Present Regionally restricted GUDMAP:9892
TS23: renal cortex Present Regionally restricted GUDMAP:9892
TS23: renal cortical interstitium Present GUDMAP:9892
TS23: renal medulla Present Regionally restricted GUDMAP:9892
TS23: renal medullary interstitium Present GUDMAP:9892
TS23: renal pelvis Present Regionally restricted GUDMAP:9892
TS23: pelvic smooth muscle Present GUDMAP:9892
TS23: perihilar interstitium Present GUDMAP:9892
TS23: renal interstitium Present GUDMAP:9892
TS23: renal vesicle Absent GUDMAP:9892
TS23: comma-shaped body Absent GUDMAP:9892
TS23: s-shaped body Absent GUDMAP:9892
TS23: capillary loop renal corpuscle Absent GUDMAP:9892
TS23: maturing renal corpuscle Absent GUDMAP:9892
TS23: cortical renal tubule Absent GUDMAP:9892
TS23: cortical collecting duct Absent GUDMAP:9892
TS23: renal cortical vasculature Absent GUDMAP:9892
TS23: immature loop of Henle Absent GUDMAP:9892
TS23: renal medullary vasculature Absent GUDMAP:9892
TS23: medullary collecting duct Absent GUDMAP:9892
TS23: pelvic urothelial lining Absent GUDMAP:9892
TS23: developing capillary loop stage nephron group Absent GUDMAP:9892
TS23: maturing nephron Absent GUDMAP:9892
TS23: collecting duct Absent GUDMAP:9892
TS23: renal vasculature Absent GUDMAP:9892
TS23: early nephron Absent GUDMAP:9892
TS23: late tubule Absent GUDMAP:9892
TS23: nephrogenic zone Ambiguous GUDMAP:9892
TS23: nephrogenic interstitium Ambiguous GUDMAP:9892 possible expression detected in some parts of the nephrogenic interstitium.

Specimen GUDMAP:9893: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:9893
TS23: ureteral mesenchyme Present GUDMAP:9893
TS23: ureteral smooth muscle layer Present GUDMAP:9893
TS23: ureteral mesenchyme outer layer Present GUDMAP:9893
TS23: urothelium of ureter Absent GUDMAP:9893


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/12/2021
MGI 6.17
The Jackson Laboratory