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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423438
Gene symbol: Aff3
Gene name: AF4/FMR2 family, member 3
Probe: ES1269 probe 1234
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen ES1269; Specimen S434: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_S434_5_3B
TS22: central nervous system Strong Regionally restricted Embryo_S434_5_3B
TS22: telencephalon Strong Regionally restricted Embryo_S434_5_3B
TS22: cerebral cortex Strong Regionally restricted Embryo_S434_5_3B
TS22: neocortex Strong Regionally restricted Embryo_S434_5_3B
TS22: olfactory cortex Moderate Regionally restricted Embryo_S434_5_3B
TS22: main olfactory bulb Moderate Regionally restricted Embryo_S434_5_3B
TS22: piriform cortex Moderate Regionally restricted Embryo_S434_5_1D
TS22: hippocampus Strong Regionally restricted Embryo_S434_5_3B
TS22: basal ganglia Strong Regionally restricted Embryo_S434_5_1D
TS22: corpus striatum Weak Regionally restricted Embryo_S434_5_5B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Strong Regionally restricted Embryo_S434_5_1D
TS22: telencephalon septum Weak Regionally restricted Embryo_S434_5_4D
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_S434_5_4D
TS22: thalamus Strong Ubiquitous Embryo_S434_5_4D
TS22: hypothalamus Strong Regionally restricted Embryo_S434_5_4D
TS22: midbrain Strong Regionally restricted Embryo_S434_5_3B
TS22: pretectum Absent
TS22: superior colliculus Strong Regionally restricted Embryo_S434_5_3B
TS22: inferior colliculus Absent
TS22: midbrain tegmentum Strong Regionally restricted Embryo_S434_5_4A
TS22: hindbrain Strong Regionally restricted Embryo_S434_5_3B
TS22: cerebellum Strong Ubiquitous Embryo_S434_5_3B
TS22: pons Moderate Regionally restricted Embryo_S434_5_4A
TS22: medulla oblongata Moderate Ubiquitous Embryo_S434_5_4A
TS22: spinal cord Moderate Regionally restricted Embryo_S434_5_3B
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Weak Scattered Embryo_S434_5_2D
TS22: cranial ganglion Weak Scattered Embryo_S434_5_2B
TS22: dorsal root ganglion Weak Scattered Embryo_S434_5_2D
TS22: eye Weak Regionally restricted Embryo_S434_5_1B
TS22: retina Weak Regionally restricted Embryo_S434_5_1B
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_S434_5_3B
TS22: olfactory epithelium Strong Regionally restricted Embryo_S434_5_3B
TS22: ear Moderate Regionally restricted Embryo_S434_5_2D
TS22: inner ear Moderate Regionally restricted Embryo_S434_5_2D
TS22: cochlea Moderate Regionally restricted Embryo_S434_5_2D
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_S434_5_2C
TS22: middle ear Moderate Regionally restricted Embryo_S434_5_1B
TS22: alimentary system Strong Regionally restricted Embryo_S434_5_3A Expression was strong in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_S434_5_3B
TS22: salivary gland Absent
TS22: tongue Moderate Regionally restricted Embryo_S434_5_4B
TS22: tooth Strong Regionally restricted Embryo_S434_5_3C
TS22: palatal shelf Strong Regionally restricted Embryo_S434_5_3A
TS22: esophagus Moderate Regionally restricted Embryo_S434_5_3C
TS22: stomach Weak Regionally restricted Embryo_S434_5_1C
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_S434_5_3D
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Strong Regionally restricted Embryo_S434_5_3D
TS22: main bronchus Absent
TS22: lung Moderate Ubiquitous Embryo_S434_5_4C
TS22: urinary system Strong Regionally restricted Embryo_S434_5_3C Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_S434_5_2B
TS22: ureter Absent
TS22: bladder Strong Regionally restricted Embryo_S434_5_3C
TS22: urethra Moderate Regionally restricted Embryo_S434_5_3C
TS22: reproductive system Strong Regionally restricted Embryo_S434_5_3A
TS22: genital tubercle Strong Regionally restricted Embryo_S434_5_3A
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_S434_5_2B Expression was strong in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Strong Regionally restricted Embryo_S434_5_2B
TS22: adrenal gland Strong Regionally restricted Embryo_S434_5_2B
TS22: cardiovascular system Weak Regionally restricted Embryo_S434_5_3B
TS22: heart Weak Regionally restricted Embryo_S434_5_3B
TS22: heart atrium Weak Regionally restricted Embryo_S434_5_3B
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_S434_5_3B Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Ubiquitous Embryo_S434_5_3B
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Strong Regionally restricted Embryo_S434_5_2A Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Strong Regionally restricted Embryo_S434_5_1D Expression was strong in the skull (base and vault).
TS22: axial skeleton Strong Regionally restricted Embryo_S434_5_3B
TS22: tail Strong Regionally restricted Embryo_S434_5_3B
TS22: forelimb Strong Regionally restricted Embryo_S434_5_1B
TS22: hindlimb Strong Regionally restricted Embryo_S434_5_2A
TS22: integumental system Absent
TS22: skin Absent
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory