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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422791
Gene symbol: Tnrc6a
Gene name: trinucleotide repeat containing 6a
Probe: HD43 probe 35
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen HD43; Specimen C1075: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1075_5_4A
TS22: central nervous system Strong Regionally restricted Embryo_C1075_5_4A
TS22: telencephalon Strong Regionally restricted Embryo_C1075_5_3A
TS22: cerebral cortex Strong Regionally restricted Embryo_C1075_5_3A
TS22: neocortex Moderate Regionally restricted Embryo_C1075_5_3C
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1075_5_3C
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1075_5_1D
TS22: piriform cortex Weak Regionally restricted Embryo_C1075_5_1D
TS22: hippocampus Moderate Regionally restricted Embryo_C1075_5_2B
TS22: basal ganglia Moderate Regionally restricted Embryo_C1075_5_1D
TS22: corpus striatum Moderate Regionally restricted Embryo_C1075_5_1D Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1075_5_3A
TS22: amygdala Moderate Regionally restricted Embryo_C1075_5_1D
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1075_5_4A
TS22: pallidum Weak Regionally restricted Embryo_C1075_5_5A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C1075_5_4A
TS22: thalamus Moderate Regionally restricted Embryo_C1075_5_4B
TS22: hypothalamus Moderate Regionally restricted Embryo_C1075_5_4A
TS22: midbrain Strong Regionally restricted Embryo_C1075_5_4A
TS22: pretectum Moderate Regionally restricted Embryo_C1075_5_4B
TS22: superior colliculus Strong Regionally restricted Embryo_C1075_5_4B
TS22: inferior colliculus Strong Regionally restricted Embryo_C1075_5_4A
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1075_5_4A
TS22: hindbrain Moderate Regionally restricted Embryo_C1075_5_4A
TS22: cerebellum Moderate Regionally restricted Embryo_C1075_5_2A
TS22: pons Moderate Regionally restricted Embryo_C1075_5_4A
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1075_5_4A
TS22: spinal cord Moderate Regionally restricted Embryo_C1075_5_4B
TS22: choroid plexus Moderate Regionally restricted Embryo_C1075_5_4A
TS22: meninges Moderate Regionally restricted Embryo_C1075_5_2B
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1075_5_3A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1075_5_3A
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1075_5_3A
TS22: eye Strong Regionally restricted Embryo_C1075_5_1A
TS22: retina Moderate Regionally restricted Embryo_C1075_5_1A
TS22: lens Strong Regionally restricted Embryo_C1075_5_1A
TS22: cornea Weak Regionally restricted Embryo_C1075_5_1A
TS22: optic nerve Weak Regionally restricted Embryo_C1075_5_3A
TS22: nose Moderate Regionally restricted Embryo_C1075_5_5B
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1075_5_5B
TS22: ear Moderate Regionally restricted Embryo_C1075_5_5C
TS22: inner ear Moderate Regionally restricted Embryo_C1075_5_5C
TS22: cochlea Moderate Regionally restricted Embryo_C1075_5_5C
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1075_5_1D
TS22: middle ear Moderate Regionally restricted Embryo_C1075_5_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C1075_5_2A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1075_5_4A
TS22: salivary gland Moderate Regionally restricted Embryo_C1075_5_3A
TS22: tongue Moderate Regionally restricted Embryo_C1075_5_4A
TS22: tooth Weak Regionally restricted Embryo_C1075_5_3C
TS22: palatal shelf Weak Regionally restricted Embryo_C1075_5_4A
TS22: esophagus Weak Regionally restricted Embryo_C1075_5_4A
TS22: stomach Moderate Regionally restricted Embryo_C1075_5_2A
TS22: liver Weak Regionally restricted Embryo_C1075_5_2A
TS22: respiratory system Moderate Regionally restricted Embryo_C1075_5_4A
TS22: pharynx Moderate Regionally restricted Embryo_C1075_5_4A
TS22: larynx Weak Regionally restricted Embryo_C1075_5_4A
TS22: trachea Moderate Regionally restricted Embryo_C1075_5_4B
TS22: main bronchus Moderate Regionally restricted Embryo_C1075_5_3C
TS22: lung Moderate Regionally restricted Embryo_C1075_5_3A
TS22: urinary system Moderate Regionally restricted Embryo_C1075_5_4C Expression was detected in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1075_5_3A
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Moderate Regionally restricted Embryo_C1075_5_4C
TS22: genital tubercle Moderate Regionally restricted Embryo_C1075_5_4C
TS22: gonad Moderate Regionally restricted Embryo_C1075_5_2C
TS22: gland Strong Regionally restricted Embryo_C1075_5_4A Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1075_5_3C
TS22: pituitary gland Strong Regionally restricted Embryo_C1075_5_4A
TS22: pancreas Weak Regionally restricted Embryo_C1075_5_3C
TS22: adrenal gland Weak Regionally restricted Embryo_C1075_5_3A
TS22: cardiovascular system Weak Regionally restricted Embryo_C1075_5_4B
TS22: heart Weak Regionally restricted Embryo_C1075_5_4B
TS22: heart atrium Weak Regionally restricted Embryo_C1075_5_4B
TS22: heart ventricle Weak Regionally restricted Embryo_C1075_5_3C
TS22: blood vessel Weak Regionally restricted Embryo_C1075_5_4D
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1075_5_4C Expression was weak in the immune system.
TS22: spleen primordium Weak Regionally restricted Embryo_C1075_5_2A
TS22: thymus primordium Weak Regionally restricted Embryo_C1075_5_4C
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1075_5_3A Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_C1075_5_2A
TS22: face Weak Regionally restricted Embryo_C1075_5_5B Expression was weak in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C1075_5_3D
TS22: forelimb Strong Regionally restricted Embryo_C1075_5_2A
TS22: hindlimb Strong Regionally restricted Embryo_C1075_5_2A
TS22: integumental system Strong Regionally restricted Embryo_C1075_5_2A
TS22: skin Strong Regionally restricted Embryo_C1075_5_2A
TS22: hair Moderate Regionally restricted Embryo_C1075_5_2A
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C1075_5_2A Expression was detected in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory