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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422599
Gene symbol: Nfrkb
Gene name: nuclear factor related to kappa B binding protein
Probe: T55122
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH2938; Specimen C4079: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C4079_2_3A
TS22: central nervous system Moderate Regionally restricted Embryo_C4079_2_4A
TS22: telencephalon Moderate Regionally restricted Embryo_C4079_2_3C
TS22: cerebral cortex Moderate Regionally restricted Embryo_C4079_2_3C
TS22: neocortex Moderate Regionally restricted Embryo_C4079_2_3C
TS22: olfactory cortex Absent
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Moderate Regionally restricted Embryo_C4079_2_3C
TS22: basal ganglia Weak Regionally restricted Embryo_C4079_2_1D
TS22: corpus striatum Weak Regionally restricted Embryo_C4079_2_1D Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_C4079_2_1D
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C4079_2_4A
TS22: thalamus Weak Regionally restricted Embryo_C4079_2_4A
TS22: hypothalamus Weak Regionally restricted Embryo_C4079_2_4A
TS22: midbrain Moderate Regionally restricted Embryo_C4079_2_4A
TS22: pretectum Absent
TS22: superior colliculus Moderate Regionally restricted Embryo_C4079_2_4A
TS22: inferior colliculus Moderate Regionally restricted Embryo_C4079_2_4A
TS22: midbrain tegmentum Weak Regionally restricted Embryo_C4079_2_4A
TS22: hindbrain Weak Regionally restricted Embryo_C4079_2_4B
TS22: cerebellum Weak Regionally restricted Embryo_C4079_2_4B
TS22: pons Weak Regionally restricted Embryo_C4079_2_4B
TS22: medulla oblongata Weak Regionally restricted Embryo_C4079_2_3C
TS22: spinal cord Weak Regionally restricted Embryo_C4079_2_4B
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Strong Regionally restricted Embryo_C4079_2_3A
TS22: cranial ganglion Strong Regionally restricted Embryo_C4079_2_3A
TS22: dorsal root ganglion Strong Regionally restricted Embryo_C4079_2_3C
TS22: eye Weak Regionally restricted Embryo_C4079_2_1C
TS22: retina Weak Regionally restricted Embryo_C4079_2_1C
TS22: lens Weak Regionally restricted Embryo_C4079_2_1A
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C4079_2_5A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C4079_2_5A
TS22: ear Weak Regionally restricted Embryo_C4079_2_1B
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Weak Regionally restricted Embryo_C4079_2_1B
TS22: alimentary system Strong Regionally restricted Embryo_C4079_2_3A Expression was strong in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C4079_2_4A
TS22: salivary gland Strong Regionally restricted Embryo_C4079_2_3A
TS22: tongue Absent
TS22: tooth Weak Regionally restricted Embryo_C4079_2_3D
TS22: palatal shelf Weak Regionally restricted Embryo_C4079_2_3D
TS22: esophagus Weak Regionally restricted Embryo_C4079_2_4C
TS22: stomach Weak Regionally restricted Embryo_C4079_2_2C
TS22: liver Weak Regionally restricted Embryo_C4079_2_2C
TS22: respiratory system Weak Regionally restricted Embryo_C4079_2_3D
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Weak Regionally restricted Embryo_C4079_2_3D
TS22: urinary system Moderate Regionally restricted Embryo_C4079_2_4C Expression was detected in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C4079_2_3B
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Moderate Regionally restricted Embryo_C4079_2_4C
TS22: genital tubercle Moderate Regionally restricted Embryo_C4079_2_4C
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C4079_2_4A Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C4079_2_4A
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_C4079_2_4A Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C4079_2_4A
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C4079_2_6D Expression was weak in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C4079_2_4B
TS22: forelimb Strong Regionally restricted Embryo_C4079_2_1B
TS22: hindlimb Moderate Regionally restricted Embryo_C4079_2_1B
TS22: integumental system Strong Regionally restricted Embryo_C4079_2_3A
TS22: skin Strong Regionally restricted Embryo_C4079_2_3A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
06/28/2022
MGI 6.20
The Jackson Laboratory