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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421683
Gene symbol: Slc27a1
Gene name: solute carrier family 27 (fatty acid transporter), member 1
Probe: MH2204 probe 1832
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH2204; Specimen C2281: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C2281_5_3D
TS22: central nervous system Strong Regionally restricted Embryo_C2281_5_3D
TS22: telencephalon Moderate Regionally restricted Embryo_C2281_5_3A
TS22: cerebral cortex Moderate Regionally restricted Embryo_C2281_5_3A
TS22: neocortex Moderate Regionally restricted Embryo_C2281_5_3A
TS22: olfactory cortex Weak Regionally restricted Embryo_C2281_5_3A
TS22: main olfactory bulb Weak Regionally restricted Embryo_C2281_5_3A
TS22: piriform cortex Weak Regionally restricted Embryo_C2281_5_5C
TS22: hippocampus Strong Regionally restricted Embryo_C2281_5_3A
TS22: basal ganglia Moderate Regionally restricted Embryo_C2281_5_3A
TS22: corpus striatum Moderate Regionally restricted Embryo_C2281_5_5B Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Scattered Embryo_C2281_5_2D
TS22: telencephalon septum Moderate Regionally restricted Embryo_C2281_5_3A
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C2281_5_3D
TS22: thalamus Moderate Regionally restricted Embryo_C2281_5_3A
TS22: hypothalamus Strong Regionally restricted Embryo_C2281_5_3D
TS22: midbrain Strong Regionally restricted Embryo_C2281_5_3D
TS22: pretectum Moderate Regionally restricted Embryo_C2281_5_3D
TS22: superior colliculus Weak Regionally restricted Embryo_C2281_5_3B
TS22: inferior colliculus Weak Regionally restricted Embryo_C2281_5_3B
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C2281_5_3D
TS22: hindbrain Strong Regionally restricted Embryo_C2281_5_3D
TS22: cerebellum Moderate Regionally restricted Embryo_C2281_5_3D
TS22: pons Strong Regionally restricted Embryo_C2281_5_3D
TS22: medulla oblongata Strong Regionally restricted Embryo_C2281_5_3D
TS22: spinal cord Strong Regionally restricted Embryo_C2281_5_4C
TS22: choroid plexus Moderate Regionally restricted Embryo_C2281_5_3C
TS22: meninges Moderate Regionally restricted Embryo_C2281_5_3C
TS22: peripheral nervous system Weak Scattered Embryo_C2281_5_3B
TS22: cranial ganglion Weak Scattered Embryo_C2281_5_2C
TS22: dorsal root ganglion Weak Scattered Embryo_C2281_5_3B
TS22: eye Weak Regionally restricted Embryo_C2281_5_2C
TS22: retina Weak Regionally restricted Embryo_C2281_5_1A
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Weak Regionally restricted Embryo_C2281_5_2C
TS22: nose Weak Regionally restricted Embryo_C2281_5_4C
TS22: olfactory epithelium Weak Regionally restricted Embryo_C2281_5_4C
TS22: ear Weak Scattered Embryo_C2281_5_2D
TS22: inner ear Weak Scattered Embryo_C2281_5_2C
TS22: cochlea Weak Scattered Embryo_C2281_5_2D
TS22: inner ear labyrinth Weak Scattered Embryo_C2281_5_1B
TS22: middle ear Absent
TS22: alimentary system Moderate Regionally restricted Embryo_C2281_5_3A Expression was detected in the digestive system.
TS22: intestine Absent
TS22: salivary gland Moderate Regionally restricted Embryo_C2281_5_3A
TS22: tongue Absent
TS22: tooth Weak Regionally restricted Embryo_C2281_5_3D
TS22: palatal shelf Absent
TS22: esophagus Moderate Regionally restricted Embryo_C2281_5_4B
TS22: stomach Weak Regionally restricted Embryo_C2281_5_2C
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_C2281_5_3B
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C2281_5_3B
TS22: urinary system Weak Regionally restricted Embryo_C2281_5_4B Expression was weak in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Weak Regionally restricted Embryo_C2281_5_4B
TS22: bladder Absent
TS22: urethra Weak Regionally restricted Embryo_C2281_5_4B
TS22: reproductive system Weak Regionally restricted Embryo_C2281_5_2C
TS22: genital tubercle Weak Regionally restricted Embryo_C2281_5_4B
TS22: gonad Weak Regionally restricted Embryo_C2281_5_6B
TS22: gland Weak Regionally restricted Embryo_C2281_5_3C Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C2281_5_3C
TS22: pituitary gland Absent
TS22: pancreas Weak Regionally restricted Embryo_C2281_5_5A
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C2281_5_4C
TS22: heart Weak Regionally restricted Embryo_C2281_5_4C
TS22: heart atrium Weak Regionally restricted Embryo_C2281_5_4C
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Weak Regionally restricted Embryo_C2281_5_6D Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Weak Regionally restricted Embryo_C2281_5_4B
TS22: cranium Weak Regionally restricted Embryo_C2281_5_4B Expression was weak in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C2281_5_4C
TS22: tail Weak Regionally restricted Embryo_C2281_5_4C
TS22: forelimb Weak Regionally restricted Embryo_C2281_5_6D
TS22: hindlimb Weak Regionally restricted Embryo_C2281_5_6B
TS22: integumental system Strong Regionally restricted Embryo_C2281_5_1D
TS22: skin Weak Regionally restricted Embryo_C2281_5_2C
TS22: hair Strong Regionally restricted Embryo_C2281_5_1D
TS22: vibrissa follicle Strong Regionally restricted Embryo_C2281_5_1D Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory