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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421168
Gene symbol: Nfix
Gene name: nuclear factor I/X
Probe: MH639 probe 549
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH639; Specimen C1439: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1439_6_5B
TS22: central nervous system Strong Regionally restricted Embryo_C1439_6_5B
TS22: telencephalon Strong Regionally restricted Embryo_C1439_6_5B
TS22: cerebral cortex Strong Regionally restricted Embryo_C1439_6_5B
TS22: neocortex Strong Regionally restricted Embryo_C1439_6_5B
TS22: olfactory cortex Weak Regionally restricted Embryo_C1439_6_5B
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1439_6_5B
TS22: piriform cortex Moderate Regionally restricted Embryo_C1439_6_6A
TS22: hippocampus Strong Regionally restricted Embryo_C1439_6_5B
TS22: basal ganglia Moderate Regionally restricted Embryo_C1439_6_6A
TS22: corpus striatum Moderate Regionally restricted Embryo_C1439_6_6A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1439_6_5A
TS22: amygdala Weak Regionally restricted Embryo_C1439_6_1C
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1439_6_4A
TS22: pallidum Moderate Regionally restricted Embryo_C1439_6_5B Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C1439_6_4A
TS22: thalamus Moderate Regionally restricted Embryo_C1439_6_4A
TS22: hypothalamus Moderate Regionally restricted Embryo_C1439_6_4A
TS22: midbrain Moderate Regionally restricted Embryo_C1439_6_4A
TS22: pretectum Absent
TS22: superior colliculus Moderate Regionally restricted Embryo_C1439_6_4A
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1439_6_3C
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1439_6_4B
TS22: hindbrain Strong Regionally restricted Embryo_C1439_6_5C
TS22: cerebellum Moderate Regionally restricted Embryo_C1439_6_4A
TS22: pons Strong Regionally restricted Embryo_C1439_6_5C
TS22: medulla oblongata Strong Regionally restricted Embryo_C1439_6_4A
TS22: spinal cord Strong Regionally restricted Embryo_C1439_6_3B
TS22: choroid plexus Absent
TS22: meninges Moderate Regionally restricted Embryo_C1439_6_2B
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1439_6_2A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1439_6_2A
TS22: dorsal root ganglion Weak Regionally restricted Embryo_C1439_6_2D
TS22: eye Weak Regionally restricted Embryo_C1439_6_1A
TS22: retina Weak Regionally restricted Embryo_C1439_6_1B
TS22: lens Absent
TS22: cornea Weak Regionally restricted Embryo_C1439_6_1A
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1439_6_3A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1439_6_3A
TS22: ear Weak Regionally restricted Embryo_C1439_6_3A
TS22: inner ear Weak Regionally restricted Embryo_C1439_6_3A
TS22: cochlea Weak Regionally restricted Embryo_C1439_6_3A
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1439_6_2A
TS22: middle ear Absent
TS22: alimentary system Moderate Regionally restricted Embryo_C1439_6_6A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1439_6_3A
TS22: salivary gland Weak Regionally restricted Embryo_C1439_6_5B
TS22: tongue Moderate Regionally restricted Embryo_C1439_6_4A
TS22: tooth Weak Regionally restricted Embryo_C1439_6_3B
TS22: palatal shelf Weak Regionally restricted Embryo_C1439_6_3D
TS22: esophagus Weak Regionally restricted Embryo_C1439_6_3D
TS22: stomach Moderate Regionally restricted Embryo_C1439_6_6A
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_C1439_6_3A
TS22: pharynx Weak Regionally restricted Embryo_C1439_6_4A
TS22: larynx Weak Regionally restricted Embryo_C1439_6_4A
TS22: trachea Weak Regionally restricted Embryo_C1439_6_3C
TS22: main bronchus Moderate Regionally restricted Embryo_C1439_6_3B
TS22: lung Moderate Regionally restricted Embryo_C1439_6_3A
TS22: urinary system Weak Regionally restricted Embryo_C1439_6_5A Expression was weak in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1439_6_5A
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1439_6_4B
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_C1439_6_3D
TS22: genital tubercle Weak Regionally restricted Embryo_C1439_6_3D
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1439_6_4B Expression was detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Moderate Regionally restricted Embryo_C1439_6_4B
TS22: pancreas Weak Regionally restricted Embryo_C1439_6_5A
TS22: adrenal gland Absent
TS22: cardiovascular system Moderate Regionally restricted Embryo_C1439_6_4A
TS22: heart Moderate Regionally restricted Embryo_C1439_6_4A
TS22: heart atrium Moderate Regionally restricted Embryo_C1439_6_2D
TS22: heart ventricle Moderate Regionally restricted Embryo_C1439_6_4A
TS22: blood vessel Weak Regionally restricted Embryo_C1439_6_4A
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1439_6_6A Expression was weak in the immune system.
TS22: spleen primordium Weak Regionally restricted Embryo_C1439_6_6A
TS22: thymus primordium Absent
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1439_6_1B Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C1439_6_6A
TS22: face Moderate Regionally restricted Embryo_C1439_6_3A Expression was detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C1439_6_5A
TS22: forelimb Strong Regionally restricted Embryo_C1439_6_1A
TS22: hindlimb Moderate Regionally restricted Embryo_C1439_6_3A
TS22: integumental system Strong Regionally restricted Embryo_C1439_6_3A
TS22: skin Strong Regionally restricted Embryo_C1439_6_3A
TS22: hair Weak Regionally restricted Embryo_C1439_6_5D
TS22: vibrissa follicle Weak Regionally restricted Embryo_C1439_6_5D Expression was weak in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory