About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421046
Gene symbol: Arid1b
Gene name: AT rich interactive domain 1B (SWI-like)
Probe: MH460 probe 382
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH460; Specimen C1184: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1184_4_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1184_4_3C
TS22: telencephalon Moderate Regionally restricted Embryo_C1184_4_3B
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1184_4_3B
TS22: neocortex Moderate Regionally restricted Embryo_C1184_4_6A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1184_4_3B
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1184_4_3B
TS22: piriform cortex Weak Regionally restricted Embryo_C1184_4_2B
TS22: hippocampus Weak Regionally restricted Embryo_C1184_4_6C
TS22: basal ganglia Weak Regionally restricted Embryo_C1184_4_4B
TS22: corpus striatum Weak Regionally restricted Embryo_C1184_4_2B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1184_4_3B
TS22: amygdala Weak Regionally restricted Embryo_C1184_4_2C
TS22: telencephalon septum Weak Regionally restricted Embryo_C1184_4_4B
TS22: pallidum Weak Regionally restricted Embryo_C1184_4_5A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1184_4_3B
TS22: thalamus Weak Regionally restricted Embryo_C1184_4_3B
TS22: hypothalamus Weak Regionally restricted Embryo_C1184_4_4C
TS22: midbrain Moderate Regionally restricted Embryo_C1184_4_4C
TS22: pretectum Moderate Regionally restricted Embryo_C1184_4_4C
TS22: superior colliculus Moderate Regionally restricted Embryo_C1184_4_4C
TS22: inferior colliculus Weak Regionally restricted Embryo_C1184_4_5C
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1184_4_4C
TS22: hindbrain Moderate Regionally restricted Embryo_C1184_4_4A
TS22: cerebellum Moderate Regionally restricted Embryo_C1184_4_4A
TS22: pons Moderate Regionally restricted Embryo_C1184_4_6A
TS22: medulla oblongata Weak Regionally restricted Embryo_C1184_4_5B
TS22: spinal cord Strong Regionally restricted Embryo_C1184_4_3C
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1184_4_3A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1184_4_3A
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1184_4_3B
TS22: eye Moderate Regionally restricted Embryo_C1184_4_1A
TS22: retina Moderate Regionally restricted Embryo_C1184_4_1A
TS22: lens Weak Regionally restricted Embryo_C1184_4_1A
TS22: optic nerve Weak Regionally restricted Embryo_C1184_4_2D
TS22: nose Moderate Regionally restricted Embryo_C1184_4_3A
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1184_4_3A
TS22: ear Strong Regionally restricted Embryo_C1184_4_3B
TS22: inner ear Strong Regionally restricted Embryo_C1184_4_3B
TS22: cochlea Strong Regionally restricted Embryo_C1184_4_3B
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1184_4_1D
TS22: middle ear Weak Regionally restricted Embryo_C1184_4_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C1184_4_3A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1184_4_3B
TS22: salivary gland Moderate Regionally restricted Embryo_C1184_4_3A
TS22: tongue Moderate Regionally restricted Embryo_C1184_4_4A
TS22: tooth Weak Regionally restricted Embryo_C1184_4_3B
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_C1184_4_4A
TS22: stomach Weak Regionally restricted Embryo_C1184_4_6A
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_C1184_4_2A
TS22: pharynx Weak Regionally restricted Embryo_C1184_4_4B
TS22: larynx Weak Regionally restricted Embryo_C1184_4_4B
TS22: trachea Weak Regionally restricted Embryo_C1184_4_4A
TS22: main bronchus Moderate Regionally restricted Embryo_C1184_4_4C
TS22: lung Moderate Regionally restricted Embryo_C1184_4_2A
TS22: urinary system Strong Regionally restricted Embryo_C1184_4_3A Expression was strong in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1184_4_4B
TS22: ureter Weak Regionally restricted Embryo_C1184_4_3A
TS22: bladder Weak Regionally restricted Embryo_C1184_4_3B
TS22: urethra Weak Regionally restricted Embryo_C1184_4_3B
TS22: reproductive system Strong Regionally restricted Embryo_C1184_4_3A
TS22: genital tubercle Strong Regionally restricted Embryo_C1184_4_3A
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_C1184_4_4C Expression was strong in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Strong Regionally restricted Embryo_C1184_4_4C
TS22: pancreas Weak Regionally restricted Embryo_C1184_4_4A
TS22: adrenal gland Weak Regionally restricted Embryo_C1184_4_2C
TS22: cardiovascular system Weak Regionally restricted Embryo_C1184_4_3C
TS22: heart Weak Regionally restricted Embryo_C1184_4_3C
TS22: heart atrium Weak Regionally restricted Embryo_C1184_4_3C
TS22: heart ventricle Weak Regionally restricted Embryo_C1184_4_3C
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1184_4_4C Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C1184_4_4C
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C1184_4_6C
TS22: face Moderate Regionally restricted Embryo_C1184_4_3A Expression was detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1184_4_5C
TS22: tail Weak Regionally restricted Embryo_C1184_4_2B
TS22: forelimb Strong Regionally restricted Embryo_C1184_4_6A
TS22: hindlimb Strong Regionally restricted Embryo_C1184_4_6A
TS22: integumental system Strong Regionally restricted Embryo_C1184_4_3A
TS22: skin Strong Regionally restricted Embryo_C1184_4_3A
TS22: hair Moderate Regionally restricted Embryo_C1184_4_6A
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C1184_4_6A Expression was detected in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/28/2022
MGI 6.20
The Jackson Laboratory