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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829358
Gene symbol: Zmat4
Gene name: zinc finger, matrin type 4
Probe: MGC clone 86103
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012057_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012057_01

Specimen euxassay_012057_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012057_02
TS23: cochlea Moderate Regionally restricted euxassay_012057_02

Specimen euxassay_012057_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012057_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_03
TS23: cochlea Moderate Regionally restricted euxassay_012057_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_03

Specimen euxassay_012057_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_04
TS23: facial ganglion Moderate Regionally restricted euxassay_012057_04
TS23: cochlea Moderate Regionally restricted euxassay_012057_04
TS23: saccule Moderate Regionally restricted euxassay_012057_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_04

Specimen euxassay_012057_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_05
TS23: facial ganglion Moderate Regionally restricted euxassay_012057_05
TS23: utricle Moderate Regionally restricted euxassay_012057_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_05

Specimen euxassay_012057_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012057_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_06
TS23: cochlea Moderate Regionally restricted euxassay_012057_06
TS23: saccule Moderate Regionally restricted euxassay_012057_06
TS23: utricle Moderate Regionally restricted euxassay_012057_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_06

Specimen euxassay_012057_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012057_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012057_07
TS23: cochlea Weak Regionally restricted euxassay_012057_07
TS23: lower jaw incisor Moderate Regionally restricted euxassay_012057_07
TS23: upper jaw incisor Moderate Regionally restricted euxassay_012057_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_012057_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_07

Specimen euxassay_012057_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Weak Regionally restricted euxassay_012057_08
TS23: vagus ganglion Moderate Regionally restricted euxassay_012057_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_08
TS23: upper jaw incisor Moderate Regionally restricted euxassay_012057_08
TS23: lower jaw incisor Moderate Regionally restricted euxassay_012057_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_08
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_08
TS23: cervical ganglion Moderate Regionally restricted euxassay_012057_08
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_08

Specimen euxassay_012057_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012057_09
TS23: trigeminal nerve Weak Regionally restricted euxassay_012057_09
TS23: cochlea Weak Regionally restricted euxassay_012057_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_09
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_012057_09
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_09

Specimen euxassay_012057_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012057_10
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_012057_10
TS23: pituitary gland Strong Regionally restricted euxassay_012057_10
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_10
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_10

Specimen euxassay_012057_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: palatal shelf Moderate Regionally restricted euxassay_012057_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_11
TS23: pituitary gland Strong Regionally restricted euxassay_012057_11
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_11
TS23: urethra Weak Regionally restricted euxassay_012057_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.

Specimen euxassay_012057_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: palatal shelf Moderate Regionally restricted euxassay_012057_12
TS23: vomeronasal organ Moderate Regionally restricted euxassay_012057_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012057_12
TS23: pituitary gland Strong Regionally restricted euxassay_012057_12
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_12
TS23: urethra Weak Regionally restricted euxassay_012057_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.

Specimen euxassay_012057_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: palatal shelf Moderate Regionally restricted euxassay_012057_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_012057_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_012057_13
TS23: thoracic ganglion Moderate Regionally restricted euxassay_012057_13
TS23: pituitary gland Strong Regionally restricted euxassay_012057_13
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_13
TS23: urethra Weak Regionally restricted euxassay_012057_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.

Specimen euxassay_012057_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: palatal shelf Moderate Regionally restricted euxassay_012057_14
TS23: vomeronasal organ Moderate Regionally restricted euxassay_012057_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012057_14
TS23: thoracic ganglion Moderate Regionally restricted euxassay_012057_14
TS23: pituitary gland Strong Regionally restricted euxassay_012057_14
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_14
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_14
TS23: urethra Weak Regionally restricted euxassay_012057_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.

Specimen euxassay_012057_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_15
TS23: vomeronasal organ Weak Regionally restricted euxassay_012057_15
TS23: thoracic ganglion Moderate Regionally restricted euxassay_012057_15
TS23: pituitary gland Strong Regionally restricted euxassay_012057_15
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_15
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_15

Specimen euxassay_012057_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_012057_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_16
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_012057_16
TS23: cervical ganglion Moderate Regionally restricted euxassay_012057_16
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_16
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_16

Specimen euxassay_012057_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_17
TS23: vagus ganglion Moderate Regionally restricted euxassay_012057_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012057_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_012057_17
TS23: spinal cord mantle layer Moderate Uniform euxassay_012057_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_012057_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_17

Specimen euxassay_012057_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012057_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_18
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012057_18
TS23: cochlea Weak Regionally restricted euxassay_012057_18
TS23: saccule Weak Regionally restricted euxassay_012057_18
TS23: upper jaw incisor Moderate Regionally restricted euxassay_012057_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012057_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012057_18
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012057_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_18

Specimen euxassay_012057_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012057_19
TS23: cochlea Weak Regionally restricted euxassay_012057_19
TS23: upper jaw incisor Moderate Regionally restricted euxassay_012057_19
TS23: lower jaw incisor Moderate Regionally restricted euxassay_012057_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_012057_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_012057_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_19
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012057_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_19

Specimen euxassay_012057_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012057_20
TS23: utricle Weak Regionally restricted euxassay_012057_20
TS23: lower jaw incisor Moderate Regionally restricted euxassay_012057_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_20
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012057_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012057_20

Specimen euxassay_012057_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_21
TS23: facial ganglion Moderate Regionally restricted euxassay_012057_21
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012057_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012057_21

Specimen euxassay_012057_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012057_22
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012057_22

Specimen euxassay_012057_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012057_23
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012057_23

Specimen euxassay_012057_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012057_24


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
10/12/2021
MGI 6.17
The Jackson Laboratory