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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828380
Gene symbol: Sorcs1
Gene name: sortilin-related VPS10 domain containing receptor 1
Probe: MGC clone 8169
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005027_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_01
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_01
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_01
TS23: neural retina Moderate Regionally restricted euxassay_005027_01

Specimen euxassay_005027_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_02
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_02
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_02
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_02
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_02
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_02
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_02
TS23: neural retina Moderate Regionally restricted euxassay_005027_02

Specimen euxassay_005027_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_03
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_03
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_03
TS23: neural retina Moderate Regionally restricted euxassay_005027_03

Specimen euxassay_005027_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_04
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_04
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_04

Specimen euxassay_005027_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_05
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_05
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_05

Specimen euxassay_005027_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_06
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_06

Specimen euxassay_005027_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_07
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_07

Specimen euxassay_005027_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_005027_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_08
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_08

Specimen euxassay_005027_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_09
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_005027_09
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_005027_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_09
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_09
TS23: bladder wall Moderate Regionally restricted euxassay_005027_09
TS23: urethra Moderate Regionally restricted euxassay_005027_09 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: frenulum Moderate Regionally restricted euxassay_005027_09

Specimen euxassay_005027_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_005027_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005027_10
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_10
TS23: bladder wall Moderate Regionally restricted euxassay_005027_10
TS23: urethra Moderate Regionally restricted euxassay_005027_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: frenulum Moderate Regionally restricted euxassay_005027_10

Specimen euxassay_005027_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_11
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_11
TS23: bladder wall Weak Regionally restricted euxassay_005027_11
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_005027_11

Specimen euxassay_005027_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_12
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_12
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_12
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_005027_12
TS23: frenulum Moderate Regionally restricted euxassay_005027_12

Specimen euxassay_005027_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_13
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_005027_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_005027_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005027_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_005027_13
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_13
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_13
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_005027_13
TS23: frenulum Moderate Regionally restricted euxassay_005027_13

Specimen euxassay_005027_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_005027_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_005027_14
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_14
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_14

Specimen euxassay_005027_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_15
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_15
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_15

Specimen euxassay_005027_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_16
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_16
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_16

Specimen euxassay_005027_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_005027_17
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_17

Specimen euxassay_005027_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005027_18
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_18

Specimen euxassay_005027_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_19
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_19
TS23: neural retina Moderate Regionally restricted euxassay_005027_19

Specimen euxassay_005027_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_005027_20
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_005027_20
TS23: neural retina Moderate Regionally restricted euxassay_005027_20


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
11/30/2021
MGI 6.17
The Jackson Laboratory