About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828170
Gene symbol: Slc27a1
Gene name: solute carrier family 27 (fatty acid transporter), member 1
Probe: MH2204 probe 1832
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018940_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_018940_01
TS23: neural retina Weak Regionally restricted euxassay_018940_01
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_01

Specimen euxassay_018940_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_02
TS23: cochlea Weak Regionally restricted euxassay_018940_02
TS23: neural retina Weak Regionally restricted euxassay_018940_02
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_02

Specimen euxassay_018940_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_03
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_03
TS23: facial ganglion Weak Regionally restricted euxassay_018940_03
TS23: cochlea Weak Regionally restricted euxassay_018940_03
TS23: trunk mesenchyme Weak Regionally restricted euxassay_018940_03
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018940_03

Specimen euxassay_018940_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_04
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_04
TS23: facial ganglion Weak Regionally restricted euxassay_018940_04
TS23: cochlea Weak Regionally restricted euxassay_018940_04
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_018940_04
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018940_04
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_018940_04
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018940_04
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018940_04

Specimen euxassay_018940_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_05
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_05
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_05
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_05
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018940_05
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018940_05
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_018940_05
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018940_05

Specimen euxassay_018940_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_018940_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_06
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018940_06
TS23: cochlea Weak Regionally restricted euxassay_018940_06
TS23: lung Weak Regionally restricted euxassay_018940_06
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_06
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_06
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018940_06
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_018940_06

Specimen euxassay_018940_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_018940_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018940_07
TS23: lung Weak Regionally restricted euxassay_018940_07
TS23: trunk mesenchyme Weak Regionally restricted euxassay_018940_07
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_07

Specimen euxassay_018940_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_018940_08
TS23: lung Weak Regionally restricted euxassay_018940_08
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_08
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_018940_08
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_018940_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_08
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_018940_08

Specimen euxassay_018940_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_018940_09
TS23: thyroid gland Weak Regionally restricted euxassay_018940_09
TS23: lung Weak Regionally restricted euxassay_018940_09
TS23: telencephalon ventricular layer Weak Uniform euxassay_018940_09
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_018940_09
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_018940_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_09
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_018940_09

Specimen euxassay_018940_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_10
TS23: thyroid gland Weak Regionally restricted euxassay_018940_10
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_018940_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_10
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_10

Specimen euxassay_018940_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_11
TS23: lung Weak Regionally restricted euxassay_018940_11
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_018940_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018940_11
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_11

Specimen euxassay_018940_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_12
TS23: esophagus Moderate Regionally restricted euxassay_018940_12
TS23: lung Weak Regionally restricted euxassay_018940_12
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018940_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018940_12
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_12

Specimen euxassay_018940_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: esophagus Moderate Regionally restricted euxassay_018940_13
TS23: axial skeleton tail region Weak Regionally restricted euxassay_018940_13
TS23: axial skeleton Weak Regionally restricted euxassay_018940_13
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_13
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_018940_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_13
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_018940_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_018940_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018940_13
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_13

Specimen euxassay_018940_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thyroid gland Weak Regionally restricted euxassay_018940_14
TS23: axial skeleton Weak Regionally restricted euxassay_018940_14
TS23: axial skeleton tail region Weak Regionally restricted euxassay_018940_14
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_14
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_018940_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018940_14
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018940_14
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_14

Specimen euxassay_018940_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_018940_15
TS23: axial skeleton Weak Regionally restricted euxassay_018940_15
TS23: lung Weak Regionally restricted euxassay_018940_15
TS23: trunk mesenchyme Weak Regionally restricted euxassay_018940_15
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_15
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_018940_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_15
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018940_15
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_15

Specimen euxassay_018940_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_018940_16
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_16
TS23: lung Weak Regionally restricted euxassay_018940_16
TS23: telencephalon ventricular layer Moderate Uniform euxassay_018940_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_16
TS23: ventral grey horn Weak Regionally restricted euxassay_018940_16

Specimen euxassay_018940_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_018940_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_17
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018940_17
TS23: cochlea Weak Regionally restricted euxassay_018940_17
TS23: lung Weak Regionally restricted euxassay_018940_17
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_018940_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_018940_17

Specimen euxassay_018940_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018940_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_018940_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_18
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018940_18
TS23: cochlea Weak Regionally restricted euxassay_018940_18
TS23: lung Weak Regionally restricted euxassay_018940_18
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_018940_18

Specimen euxassay_018940_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_19
TS23: submandibular gland primordium Strong Regionally restricted euxassay_018940_19
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_19
TS23: facial ganglion Weak Regionally restricted euxassay_018940_19
TS23: cochlea Weak Regionally restricted euxassay_018940_19
TS23: lung Weak Regionally restricted euxassay_018940_19
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_018940_19
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018940_19

Specimen euxassay_018940_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_20
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_20
TS23: facial ganglion Weak Regionally restricted euxassay_018940_20
TS23: cochlea Weak Regionally restricted euxassay_018940_20
TS23: lung Weak Regionally restricted euxassay_018940_20
TS23: trunk mesenchyme Weak Regionally restricted euxassay_018940_20
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_20
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_018940_20
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018940_20
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018940_20
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018940_20

Specimen euxassay_018940_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_21
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018940_21
TS23: cochlea Weak Regionally restricted euxassay_018940_21
TS23: neural retina Weak Regionally restricted euxassay_018940_21
TS23: lung Weak Regionally restricted euxassay_018940_21
TS23: telencephalon ventricular layer Strong Uniform euxassay_018940_21
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_018940_21
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018940_21
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018940_21
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018940_21
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_018940_21

Specimen euxassay_018940_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018940_22
TS23: neural retina Weak Regionally restricted euxassay_018940_22
TS23: lung Weak Regionally restricted euxassay_018940_22


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/12/2021
MGI 6.17
The Jackson Laboratory