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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827081
Gene symbol: Pcdh9
Gene name: protocadherin 9
Probe: T38699
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_014258_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Single cells euxassay_014258_02

Specimen euxassay_014258_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Single cells euxassay_014258_03
TS23: facial ganglion Moderate Regionally restricted euxassay_014258_03

Specimen euxassay_014258_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Single cells euxassay_014258_04
TS23: facial ganglion Moderate Regionally restricted euxassay_014258_04

Specimen euxassay_014258_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Single cells euxassay_014258_05
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_014258_05

Specimen euxassay_014258_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Single cells euxassay_014258_06
TS23: pons mantle layer Weak Regionally restricted euxassay_014258_06

Specimen euxassay_014258_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Single cells euxassay_014258_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_07

Specimen euxassay_014258_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Single cells euxassay_014258_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_08

Specimen euxassay_014258_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Weak Regionally restricted euxassay_014258_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_014258_09

Specimen euxassay_014258_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Weak Regionally restricted euxassay_014258_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_10

Specimen euxassay_014258_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Weak Regionally restricted euxassay_014258_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_014258_11

Specimen euxassay_014258_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_13

Specimen euxassay_014258_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_14

Specimen euxassay_014258_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_15

Specimen euxassay_014258_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_16
TS23: pons mantle layer Weak Regionally restricted euxassay_014258_16

Specimen euxassay_014258_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014258_17
TS23: pons mantle layer Weak Regionally restricted euxassay_014258_17

Specimen euxassay_014258_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_014258_18

Specimen euxassay_014258_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: facial ganglion Moderate Regionally restricted euxassay_014258_19


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory