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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826111
Gene symbol: Matn1
Gene name: matrilin 1, cartilage matrix protein
Probe: MGC clone 54621
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003820_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_003820_01
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_01
TS23: rib Strong Regionally restricted euxassay_003820_01
TS23: fibula Strong Regionally restricted euxassay_003820_01
TS23: tibia Strong Regionally restricted euxassay_003820_01
TS23: femur Strong Regionally restricted euxassay_003820_01
TS23: hand Strong Regionally restricted euxassay_003820_01
TS23: humerus Strong Regionally restricted euxassay_003820_01
TS23: scapula Strong Regionally restricted euxassay_003820_01

Specimen euxassay_003820_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_02
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_02
TS23: rib Strong Regionally restricted euxassay_003820_02
TS23: femur Strong Regionally restricted euxassay_003820_02
TS23: fibula Strong Regionally restricted euxassay_003820_02
TS23: tibia Strong Regionally restricted euxassay_003820_02
TS23: hand Strong Regionally restricted euxassay_003820_02
TS23: humerus Strong Regionally restricted euxassay_003820_02
TS23: scapula Strong Regionally restricted euxassay_003820_02

Specimen euxassay_003820_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_003820_03
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_03
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_03
TS23: rib Strong Regionally restricted euxassay_003820_03
TS23: femur Strong Regionally restricted euxassay_003820_03
TS23: foot Strong Regionally restricted euxassay_003820_03
TS23: scapula Strong Regionally restricted euxassay_003820_03
TS23: hand Strong Regionally restricted euxassay_003820_03
TS23: humerus Strong Regionally restricted euxassay_003820_03

Specimen euxassay_003820_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_003820_04
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_04
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_04
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_04
TS23: rib Strong Regionally restricted euxassay_003820_04
TS23: axial skeleton Strong Regionally restricted euxassay_003820_04
TS23: foot Strong Regionally restricted euxassay_003820_04
TS23: femur Strong Regionally restricted euxassay_003820_04
TS23: humerus Strong Regionally restricted euxassay_003820_04
TS23: hand Strong Regionally restricted euxassay_003820_04
TS23: scapula Strong Regionally restricted euxassay_003820_04

Specimen euxassay_003820_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_05
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_05
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_05
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_05
TS23: axial skeleton Strong Regionally restricted euxassay_003820_05
TS23: rib Strong Regionally restricted euxassay_003820_05
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_05
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_05
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_05
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_05
TS23: femur Strong Regionally restricted euxassay_003820_05
TS23: hand Strong Regionally restricted euxassay_003820_05

Specimen euxassay_003820_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_06
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_06
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_06
TS23: axial skeleton Strong Regionally restricted euxassay_003820_06
TS23: rib Strong Regionally restricted euxassay_003820_06
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_06
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_06
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_06
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_06
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_06
TS23: femur Strong Regionally restricted euxassay_003820_06
TS23: acetabular region Strong Regionally restricted euxassay_003820_06

Specimen euxassay_003820_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_07
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_07
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_07
TS23: axial skeleton Strong Regionally restricted euxassay_003820_07
TS23: rib Strong Regionally restricted euxassay_003820_07
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_003820_07
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_07
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_07
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_07
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_07
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_07
TS23: clavicle Strong Regionally restricted euxassay_003820_07

Specimen euxassay_003820_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_08
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_08
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_08
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_08
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_08
TS23: rib Strong Regionally restricted euxassay_003820_08
TS23: axial skeleton Strong Regionally restricted euxassay_003820_08
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_003820_08
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_08
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_08
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_08
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_08
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_08
TS23: clavicle Strong Regionally restricted euxassay_003820_08
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_08

Specimen euxassay_003820_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_09
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_09
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_09
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_09
TS23: rib Strong Regionally restricted euxassay_003820_09
TS23: axial skeleton Strong Regionally restricted euxassay_003820_09
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_09
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_09
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_09
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_09
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_09
TS23: hyoid Strong Regionally restricted euxassay_003820_09
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_09
TS23: cricoid cartilage Strong Regionally restricted euxassay_003820_09

Specimen euxassay_003820_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_10
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_10
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_10
TS23: axial skeleton Strong Regionally restricted euxassay_003820_10
TS23: rib Strong Regionally restricted euxassay_003820_10
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_10
TS23: cricoid cartilage Strong Regionally restricted euxassay_003820_10

Specimen euxassay_003820_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_11
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_11
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_11
TS23: rib Strong Regionally restricted euxassay_003820_11
TS23: axial skeleton Strong Regionally restricted euxassay_003820_11
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_11
TS23: cricoid cartilage Strong Regionally restricted euxassay_003820_11
TS23: hyoid Strong Regionally restricted euxassay_003820_11

Specimen euxassay_003820_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_12
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_12
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_12
TS23: axial skeleton Strong Regionally restricted euxassay_003820_12
TS23: sternum Strong Regionally restricted euxassay_003820_12
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_12
TS23: cricoid cartilage Strong Regionally restricted euxassay_003820_12

Specimen euxassay_003820_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_13
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_13
TS23: nasal septum Strong Regionally restricted euxassay_003820_13
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_13
TS23: axial skeleton Strong Regionally restricted euxassay_003820_13
TS23: sternum Strong Regionally restricted euxassay_003820_13
TS23: hyoid Strong Regionally restricted euxassay_003820_13
TS23: thyroid cartilage Strong Regionally restricted euxassay_003820_13

Specimen euxassay_003820_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_14
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_14
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_14
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_14
TS23: axial skeleton Strong Regionally restricted euxassay_003820_14
TS23: rib Strong Regionally restricted euxassay_003820_14
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_003820_14
TS23: hyoid Strong Regionally restricted euxassay_003820_14

Specimen euxassay_003820_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_15
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_15
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_15
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_15
TS23: rib Strong Regionally restricted euxassay_003820_15
TS23: axial skeleton Strong Regionally restricted euxassay_003820_15
TS23: femur Strong Regionally restricted euxassay_003820_15
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_003820_15
TS23: clavicle Strong Regionally restricted euxassay_003820_15
TS23: hyoid Strong Regionally restricted euxassay_003820_15

Specimen euxassay_003820_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_16
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_16
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_16
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_16
TS23: rib Strong Regionally restricted euxassay_003820_16
TS23: femur Strong Regionally restricted euxassay_003820_16
TS23: clavicle Strong Regionally restricted euxassay_003820_16

Specimen euxassay_003820_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_17
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_17
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_17
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_17
TS23: rib Strong Regionally restricted euxassay_003820_17
TS23: femur Strong Regionally restricted euxassay_003820_17

Specimen euxassay_003820_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Strong Regionally restricted euxassay_003820_18
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_18
TS23: exoccipital bone Strong Regionally restricted euxassay_003820_18
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_18
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_18
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_18
TS23: rib Strong Regionally restricted euxassay_003820_18
TS23: femur Strong Regionally restricted euxassay_003820_18
TS23: humerus Strong Regionally restricted euxassay_003820_18

Specimen euxassay_003820_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_19
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_19
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_003820_19
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_19
TS23: rib Strong Regionally restricted euxassay_003820_19
TS23: femur Strong Regionally restricted euxassay_003820_19
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_19
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_19
TS23: humerus Strong Regionally restricted euxassay_003820_19
TS23: scapula Strong Regionally restricted euxassay_003820_19

Specimen euxassay_003820_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_20
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_20
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_20
TS23: rib Strong Regionally restricted euxassay_003820_20
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_20
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_20
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_20
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_20
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_20
TS23: tibia Strong Regionally restricted euxassay_003820_20
TS23: femur Strong Regionally restricted euxassay_003820_20
TS23: scapula Strong Regionally restricted euxassay_003820_20
TS23: humerus Strong Regionally restricted euxassay_003820_20

Specimen euxassay_003820_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_21
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_21
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_21
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003820_21
TS23: rib Strong Regionally restricted euxassay_003820_21
TS23: fibula Strong Regionally restricted euxassay_003820_21
TS23: tibia Strong Regionally restricted euxassay_003820_21
TS23: femur Strong Regionally restricted euxassay_003820_21
TS23: hindlimb digit 1 Strong Regionally restricted euxassay_003820_21
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_003820_21
TS23: hindlimb digit 3 Strong Regionally restricted euxassay_003820_21
TS23: hindlimb digit 4 Strong Regionally restricted euxassay_003820_21
TS23: hindlimb digit 5 Strong Regionally restricted euxassay_003820_21
TS23: humerus Strong Regionally restricted euxassay_003820_21
TS23: hand Strong Regionally restricted euxassay_003820_21
TS23: scapula Strong Regionally restricted euxassay_003820_21

Specimen euxassay_003820_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_22
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_22
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_22
TS23: rib Strong Regionally restricted euxassay_003820_22
TS23: fibula Strong Regionally restricted euxassay_003820_22
TS23: tibia Strong Regionally restricted euxassay_003820_22
TS23: femur Strong Regionally restricted euxassay_003820_22
TS23: humerus Strong Regionally restricted euxassay_003820_22
TS23: hand Strong Regionally restricted euxassay_003820_22

Specimen euxassay_003820_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Strong Regionally restricted euxassay_003820_23
TS23: basioccipital bone Strong Regionally restricted euxassay_003820_23
TS23: temporal bone petrous part Strong Regionally restricted euxassay_003820_23
TS23: rib Strong Regionally restricted euxassay_003820_23
TS23: fibula Strong Regionally restricted euxassay_003820_23
TS23: tibia Strong Regionally restricted euxassay_003820_23
TS23: hand Strong Regionally restricted euxassay_003820_23
TS23: humerus Strong Regionally restricted euxassay_003820_23

Specimen euxassay_003820_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_003820_24
TS23: rib Strong Regionally restricted euxassay_003820_24
TS23: knee joint primordium Strong Regionally restricted euxassay_003820_24
TS23: humerus Strong Regionally restricted euxassay_003820_24
TS23: ulna Strong Regionally restricted euxassay_003820_24
TS23: radius Strong Regionally restricted euxassay_003820_24
TS23: hand Strong Regionally restricted euxassay_003820_24


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
10/12/2021
MGI 6.17
The Jackson Laboratory