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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823974
Gene symbol: Col11a1
Gene name: collagen, type XI, alpha 1
Probe: MGC clone 59348
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004200_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Moderate Regionally restricted euxassay_004200_01
TS23: hand Moderate Regionally restricted euxassay_004200_01
TS23: humerus Moderate Regionally restricted euxassay_004200_01
TS23: radius Moderate Regionally restricted euxassay_004200_01
TS23: ulna Moderate Regionally restricted euxassay_004200_01
TS23: foot Moderate Regionally restricted euxassay_004200_01
TS23: fibula Moderate Regionally restricted euxassay_004200_01
TS23: tibia Moderate Regionally restricted euxassay_004200_01
TS23: femur Moderate Regionally restricted euxassay_004200_01

Specimen euxassay_004200_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_02
TS23: otic capsule Moderate Regionally restricted euxassay_004200_02
TS23: cranium Moderate Regionally restricted euxassay_004200_02
TS23: hand Moderate Regionally restricted euxassay_004200_02
TS23: humerus Moderate Regionally restricted euxassay_004200_02
TS23: radius Moderate Regionally restricted euxassay_004200_02
TS23: ulna Moderate Regionally restricted euxassay_004200_02
TS23: foot Moderate Regionally restricted euxassay_004200_02
TS23: fibula Moderate Regionally restricted euxassay_004200_02
TS23: tibia Moderate Regionally restricted euxassay_004200_02
TS23: femur Moderate Regionally restricted euxassay_004200_02

Specimen euxassay_004200_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_03
TS23: otic capsule Moderate Regionally restricted euxassay_004200_03
TS23: cranium Moderate Regionally restricted euxassay_004200_03
TS23: hand Moderate Regionally restricted euxassay_004200_03
TS23: humerus Moderate Regionally restricted euxassay_004200_03
TS23: foot Moderate Regionally restricted euxassay_004200_03
TS23: fibula Moderate Regionally restricted euxassay_004200_03
TS23: tibia Moderate Regionally restricted euxassay_004200_03
TS23: femur Moderate Regionally restricted euxassay_004200_03

Specimen euxassay_004200_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_04
TS23: mandible Moderate Regionally restricted euxassay_004200_04
TS23: otic capsule Moderate Regionally restricted euxassay_004200_04
TS23: cranium Moderate Regionally restricted euxassay_004200_04
TS23: hand Moderate Regionally restricted euxassay_004200_04
TS23: humerus Moderate Regionally restricted euxassay_004200_04
TS23: foot Moderate Regionally restricted euxassay_004200_04
TS23: femur Moderate Regionally restricted euxassay_004200_04

Specimen euxassay_004200_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_05
TS23: mandible Moderate Regionally restricted euxassay_004200_05
TS23: otic capsule Moderate Regionally restricted euxassay_004200_05
TS23: cranium Moderate Regionally restricted euxassay_004200_05
TS23: hand Moderate Regionally restricted euxassay_004200_05
TS23: humerus Moderate Regionally restricted euxassay_004200_05
TS23: foot Moderate Regionally restricted euxassay_004200_05
TS23: femur Moderate Regionally restricted euxassay_004200_05

Specimen euxassay_004200_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_06
TS23: mandible Moderate Regionally restricted euxassay_004200_06
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_06
TS23: otic capsule Moderate Regionally restricted euxassay_004200_06
TS23: cranium Moderate Regionally restricted euxassay_004200_06
TS23: hand Moderate Regionally restricted euxassay_004200_06
TS23: humerus Moderate Regionally restricted euxassay_004200_06
TS23: femur Moderate Regionally restricted euxassay_004200_06
TS23: foot Moderate Regionally restricted euxassay_004200_06

Specimen euxassay_004200_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_07
TS23: mandible Moderate Regionally restricted euxassay_004200_07
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_07
TS23: otic capsule Moderate Regionally restricted euxassay_004200_07
TS23: cranium Moderate Regionally restricted euxassay_004200_07
TS23: femur Moderate Regionally restricted euxassay_004200_07

Specimen euxassay_004200_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_08
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_08
TS23: mandible Moderate Regionally restricted euxassay_004200_08
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_08
TS23: otic capsule Moderate Regionally restricted euxassay_004200_08
TS23: cranium Moderate Regionally restricted euxassay_004200_08
TS23: femur Moderate Regionally restricted euxassay_004200_08
TS23: clavicle Moderate Regionally restricted euxassay_004200_08
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_08

Specimen euxassay_004200_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_09
TS23: mandible Moderate Regionally restricted euxassay_004200_09
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_09
TS23: otic capsule Moderate Regionally restricted euxassay_004200_09
TS23: cranium Moderate Regionally restricted euxassay_004200_09
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_09
TS23: clavicle Moderate Regionally restricted euxassay_004200_09
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_09

Specimen euxassay_004200_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_10
TS23: mandible Moderate Regionally restricted euxassay_004200_10
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_10
TS23: otic capsule Moderate Regionally restricted euxassay_004200_10
TS23: cranium Moderate Regionally restricted euxassay_004200_10
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_10
TS23: clavicle Moderate Regionally restricted euxassay_004200_10
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_10

Specimen euxassay_004200_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_11
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_11
TS23: nasal septum Moderate Regionally restricted euxassay_004200_11
TS23: mandible Weak Regionally restricted euxassay_004200_11
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_11
TS23: cranium Moderate Regionally restricted euxassay_004200_11
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_11

Specimen euxassay_004200_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_12
TS23: nasal septum Moderate Regionally restricted euxassay_004200_12
TS23: mandible Weak Regionally restricted euxassay_004200_12
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_12
TS23: cranium Moderate Regionally restricted euxassay_004200_12
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_12

Specimen euxassay_004200_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_004200_13
TS23: nasal septum Moderate Regionally restricted euxassay_004200_13
TS23: mandible Moderate Regionally restricted euxassay_004200_13
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_13
TS23: cranium Moderate Regionally restricted euxassay_004200_13
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_13
TS23: hyoid Moderate Regionally restricted euxassay_004200_13

Specimen euxassay_004200_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_004200_14
TS23: nasal septum Moderate Regionally restricted euxassay_004200_14
TS23: mandible Moderate Regionally restricted euxassay_004200_14
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_14
TS23: cranium Moderate Regionally restricted euxassay_004200_14
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_14
TS23: hyoid Moderate Regionally restricted euxassay_004200_14

Specimen euxassay_004200_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_15
TS23: nasal septum Moderate Regionally restricted euxassay_004200_15
TS23: mandible Weak Regionally restricted euxassay_004200_15
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_15
TS23: cranium Moderate Regionally restricted euxassay_004200_15
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_15
TS23: hyoid Moderate Regionally restricted euxassay_004200_15

Specimen euxassay_004200_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_16
TS23: nasal septum Moderate Regionally restricted euxassay_004200_16
TS23: mandible Weak Regionally restricted euxassay_004200_16
TS23: cranium Moderate Regionally restricted euxassay_004200_16
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_16
TS23: hyoid Moderate Regionally restricted euxassay_004200_16

Specimen euxassay_004200_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_17
TS23: mandible Moderate Regionally restricted euxassay_004200_17
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_17
TS23: otic capsule Moderate Regionally restricted euxassay_004200_17
TS23: cranium Moderate Regionally restricted euxassay_004200_17
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_17
TS23: clavicle Moderate Regionally restricted euxassay_004200_17

Specimen euxassay_004200_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_18
TS23: mandible Moderate Regionally restricted euxassay_004200_18
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_18
TS23: otic capsule Moderate Regionally restricted euxassay_004200_18
TS23: cranium Moderate Regionally restricted euxassay_004200_18
TS23: femur Moderate Regionally restricted euxassay_004200_18
TS23: clavicle Moderate Regionally restricted euxassay_004200_18

Specimen euxassay_004200_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_19
TS23: mandible Moderate Regionally restricted euxassay_004200_19
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_19
TS23: otic capsule Moderate Regionally restricted euxassay_004200_19
TS23: cranium Moderate Regionally restricted euxassay_004200_19
TS23: femur Strong Regionally restricted euxassay_004200_19
TS23: foot Moderate Regionally restricted euxassay_004200_19
TS23: clavicle Moderate Regionally restricted euxassay_004200_19

Specimen euxassay_004200_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_20
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_20
TS23: mandible Moderate Regionally restricted euxassay_004200_20
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_20
TS23: otic capsule Moderate Regionally restricted euxassay_004200_20
TS23: cranium Moderate Regionally restricted euxassay_004200_20
TS23: humerus Moderate Regionally restricted euxassay_004200_20
TS23: femur Strong Regionally restricted euxassay_004200_20
TS23: foot Strong Regionally restricted euxassay_004200_20
TS23: clavicle Moderate Regionally restricted euxassay_004200_20

Specimen euxassay_004200_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_21
TS23: mandible Moderate Regionally restricted euxassay_004200_21
TS23: femur Moderate Regionally restricted euxassay_004200_21

Specimen euxassay_004200_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_22
TS23: femur Weak Regionally restricted euxassay_004200_22

Specimen euxassay_004200_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_23

Specimen euxassay_004200_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_24
TS23: cranium Moderate Regionally restricted euxassay_004200_24
TS23: humerus Moderate Regionally restricted euxassay_004200_24
TS23: hand Moderate Regionally restricted euxassay_004200_24
TS23: foot Moderate Regionally restricted euxassay_004200_24
TS23: fibula Moderate Regionally restricted euxassay_004200_24
TS23: tibia Moderate Regionally restricted euxassay_004200_24


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory