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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823963
Gene symbol: Cntn3
Gene name: contactin 3
Probe: T36171
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009023_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_06

Specimen euxassay_009023_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_07

Specimen euxassay_009023_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_08
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_08

Specimen euxassay_009023_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_09
TS23: ventral grey horn Moderate Single cells euxassay_009023_09

Specimen euxassay_009023_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_10
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_10
TS23: ventral grey horn Moderate Single cells euxassay_009023_10

Specimen euxassay_009023_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_11
TS23: ventral grey horn Moderate Single cells euxassay_009023_11

Specimen euxassay_009023_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_12

Specimen euxassay_009023_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_13
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_13
TS23: ventral grey horn Moderate Single cells euxassay_009023_13

Specimen euxassay_009023_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_14
TS23: ventral grey horn Moderate Single cells euxassay_009023_14

Specimen euxassay_009023_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_15
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_009023_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_15
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_15
TS23: ventral grey horn Moderate Single cells euxassay_009023_15

Specimen euxassay_009023_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_16
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_009023_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_16
TS23: ventral grey horn Moderate Single cells euxassay_009023_16

Specimen euxassay_009023_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_17

Specimen euxassay_009023_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_18
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_18

Specimen euxassay_009023_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_19


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory