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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823901
Gene symbol: Clcn6
Gene name: chloride channel, voltage-sensitive 6
Probe: T35147
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008300_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_008300_01

Specimen euxassay_008300_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_008300_02

Specimen euxassay_008300_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_03
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_03
TS23: neural retina Weak Spotted euxassay_008300_03

Specimen euxassay_008300_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_04
TS23: facial ganglion Weak Regionally restricted euxassay_008300_04

Specimen euxassay_008300_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_05
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_05

Specimen euxassay_008300_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_008300_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_008300_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_06
TS23: pons mantle layer Weak Regionally restricted euxassay_008300_06 trigeminal motor nucleus

Specimen euxassay_008300_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_008300_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_008300_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_07 facial motor nucleus

Specimen euxassay_008300_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_008300_08 facial motor nucleus

Specimen euxassay_008300_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008300_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_09 facial motor nucleus
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_09
TS23: cervical ganglion Weak Regionally restricted euxassay_008300_09

Specimen euxassay_008300_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008300_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_10
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_10

Specimen euxassay_008300_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_11

Specimen euxassay_008300_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_12

Specimen euxassay_008300_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_008300_13

Specimen euxassay_008300_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_008300_14

Specimen euxassay_008300_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_15 facial motor nucleus

Specimen euxassay_008300_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_16 facial motor nucleus
TS23: cervical ganglion Weak Regionally restricted euxassay_008300_16
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_16

Specimen euxassay_008300_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Weak Regionally restricted euxassay_008300_17
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_17
TS23: pons mantle layer Weak Regionally restricted euxassay_008300_17 trigeminal motor nucleus

Specimen euxassay_008300_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_008300_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_18

Specimen euxassay_008300_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_19

Specimen euxassay_008300_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_20

Specimen euxassay_008300_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_21
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_21

Specimen euxassay_008300_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_22

Specimen euxassay_008300_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Spotted euxassay_008300_23

Specimen euxassay_008300_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Spotted euxassay_008300_24


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory