Search     All Search Tools Genes Genes & Markers Query Batch Query Maps & Mapping Data Mouse Genome Browser Mouse Linkage Map with Orthologs Cytogenetic Maps Physical Maps Mapping Data Query RI Strain Distribution Patterns RC Strain Distribution Patterns DNA Mapping Panel Data Sets More Phenotypes Phenotypes, Alleles & Diseases Query Mammalian Phenotype (MP) Browser Human Disease (OMIM) Browser More Expression Gene Expression Literature Query Gene Expression Data Query Gene Expression Data Expanded Query Mouse Anatomical Dictionary Browser EMAGE Anatomical Section Browser cDNA Clone Query More Function GO Browser Genes & Markers Query Batch Query More Pathways Strains / SNPs SNP Query RFLP/PCR Polymorphism Query Summary of SNP Data in MGI Inbred Strain Characteristics Genealogy Chart of Inbred Strains More Orthology Orthology Query Protein Superfamily (PIRSF) Browser Mouse Linkage Map with Orthologs Mouse-Human Orthology Map Mouse-Rat Orthology Map More Tumors Sequences Sequence Query Accession IDs Query MouseBLAST Protein Superfamily (PIRSF) Browser Mouse Genome Browser Batch Query Probes & Clones Molecular Probes and Clones Query cDNA Clones Query References Reference Query Gene Expression Literature Query Vocabularies GO Browser Human Disease (OMIM) Browser Mammalian Phenotype (MP) Browser Protein Superfamily (PIRSF) Browser Mouse Anatomical Dictionary Adult Mouse Anatomy Browser Accession IDs Query Batch Query MouseBLAST Mouse Genome Browser  Download     All MGI Reports Batch Query Genes & Markers Sequence Data Mammalian Orthology Gene Ontology Data Strains & Polymorphisms Gene Expression Phenotypic Data Nomenclature References Clone Collections  More Resources       More Resources Index Research Community E-mail Lists Online Books Biology of the Laboratory Mouse edited by Earl L. Green Mouse Genetics by Lee Silver The Anatomy of the Laboratory Mouse by Margaret J. Cook The Coat Colors of Mice by Willys K. Silvers Origins of Inbred Mice edited by Herbert C. Morse III Nomenclature Home Page MGI Glossary Prototype Tools Gene Expression Notebook (GEN) Mouse Phenome Database (MPD) Deltagen and Lexicon Knockout Mice International Knockout Mouse Consortium (IKMC) Knockout Mouse Project (KOMP, USA) European Conditional Mouse Mutagenesis (EUCOMM, Europe) North American Conditional Mouse Mutagenesis (NorCOMM, Canada) Texas Institute for Genomic Medicine (TIGM, USA) Trans-NIH Mouse Initiatives Contributed Data Sets Community Links Mouse Resources & Model Organism Links Phenotypes & Mutants Community Resources Mouse Facts Software Developer Tools Creating Web Links to MGI Direct SQL Account Database Schema Browser All MGI Reports More Submit Data     Find Mice (IMSR)      Contact Us

Genes, Genome Features & Maps | Phenotypes, Alleles & Disease Models | Gene Expression | GO Functional Annotations | Biochemical Pathways | Strains, SNPs & Polymorphisms | Mammalian Orthology | Mouse Tumor Biology | Sequences | Probes & Clones | References | Vocabularies | Accession IDs Query | Batch Query | MouseBLAST | Mouse Genome Browser

Genes, Genome Features & Maps • Genes & Markers Query Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype. • Batch Query Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO). • Graphical Map Tools Build graphical displays of genetic maps or regions of the mouse genome. • Mouse Genome Browser Create a graphical display of genome features from regions of the mouse genome. • Mouse Linkage Map with Orthologs Build a comparative map using the Linkage Map tool. • Cytogenetic Maps Build a graphical Cytogenic Map with selected parameters. • Physical Maps Build a graphical Physical Map with selected parameters. • Mapping Data Search for genetic mapping data. • Mapping Data Query Search by experiment type, marker symbol, chromosome, or reference. • RI Strain Distribution Patterns Search MGI mapping data for recombinant inbred strain distribution patterns. • RC Strain Distribution Patterns Search MGI mapping data for recombinant congenic strain distribution patterns. • DNA Mapping Panel Data Sets Search by Mapping Panel and chromosome.

Phenotypes, Alleles & Disease Models • Phenotypes, Alleles & Diseases Query Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location. • Mammalian Phenotype (MP) Browser Search for a phenotype term to find relevant mutant genotypes. • Human Disease (OMIM) Browser Search for a human disease or condition term to find mouse models.

Gene Expression • Gene Expression Literature Query Search for references on gene expression during development. • Gene Expression Data Query Search for detailed gene expression assay results. • Gene Expression Data Expanded Query Search for genes expressed in some anatomical structures and/or developmental stages but not in others. • Mouse Anatomical Dictionary Browser An extensive ontology of anatomical structures for the postnatal mouse. • EMAGE Anatomical Section Browser Search the Edinburgh Mouse Atlas for anatomical terms and query for associated expression data. • cDNA Clone Query Search for expression information based on tissue or cell-line origin of cDNAs.

GO Functional Annotations • GO Browser Browse the Gene Ontology and mouse annotations in MGI. • Genes & Markers Query Search for genes using GO terms and other gene attributes. • Batch Query Obtain sets of MGI IDs for use in GO tools.

Strains, SNPs & Polymorphisms • SNP Query Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes. • RFLP/PCR Polymorphism Query Search for RFLP or PCR based polymorphisms by strain, locus symbol, or map position. • Summary of SNP Data in MGI View report of SNP data in MGI organized by chromosome, strain, and submitter. • Inbred Strain Characteristics Search the Listing of Inbred Strains of Mice and Rats by M. Festing. • Genealogy Chart of Inbred Strains View the genealogy chart of inbred strains.

Mammalian Orthology • Orthology Query Search for orthologs between two species using marker symbol or name, accession ID, chromosomal location, author, or reference ID. • Protein Superfamily (PIRSF) Browser Search for gene family data by the Protein Information Resource SuperFamily classification names. • Mouse Linkage Map with Orthologs Build a comparative map using the Linkage Map tool. • Mouse-Human Orthology Map View the Mouse-Human comparative map. • Mouse-Rat Orthology Map View the Mouse-Rat comparative map.

Sequences • Sequence Query Search for mouse sequences by sequence attributes, sources, and/or properties of associated genes and markers in MGI. • Accession IDs Query Use sequence IDs to find associated sequences, genes, markers, probes and clones. • MouseBLAST Search for sequence similarity for mouse, human, or rat. • Protein Superfamily (PIRSF) Browser Search for gene family data by the Protein Information Resource SuperFamily classification names. • Mouse Genome Browser Create a graphical display of genome features from regions of the mouse genome. • Batch Query Download data for a batch of gene IDs or symbols.

Probes & Clones • Molecular Probes and Clones Query Search by probe/clone name, sequence type, vector type, marker symbol, origin, or reference. • cDNA Clones Query Search for expression information based on tissue or cell-line origin of cDNAs.

References • Reference Query Search for references (with abstracts) by title, author, journal, year, or abstract. • Gene Expression Literature Query Search for references on gene expression during development.

Vocabularies • GO Browser Browse the Gene Ontology and mouse annotations in MGI. • Human Disease (OMIM) Browser Search for a human disease or condition term to find mouse models. • Mammalian Phenotype (MP) Browser Search for a phenotype term to find relevant mutant genotypes. • Protein Superfamily (PIRSF) Browser Search for gene family data by the Protein Information Resource SuperFamily classification names. • Mouse Anatomical Dictionary Search or browse for anatomical structures; includes links to associated expression results. • Adult Mouse Anatomy Browser An extensive Stage 28 dictionary; not yet in use for annotation of expression data.

Other Searches • Biochemical Pathways View mouse genomic data in the context of metabolic cellular processes such as biosynthesis, degradation, energy production, and detoxification. • Mouse Tumor Biology MTB provides information on the frequency, pathology, and genetics of spontaneous and induced tumors in mice. • Accession IDs Query Use MGI IDs or external IDs referenced in MGI to find associated data. • Batch Query Download gene/marker data for a batch of IDs or symbols. • MouseBLAST Search for sequence similarity for mouse, human, or rat. • Mouse Genome Browser Create a graphical display of genome features from regions of the mouse genome.