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All Search Tools
Genes, Genome Features & Maps
Genes & Markers Query
Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.
Batch Query
Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).
Multiple Genome Viewer (MGV)
Compare genome features of de novo sequenced mouse strains.
JBrowse Genome Browser
Create a graphical display of genome features from regions of the mouse genome.
MouseMine
Access MGI data via InterMine.
Phenotypes, Alleles & Disease Models
Phenotypes, Alleles & Diseases Query
Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.
Mammalian Phenotype (MP) Browser
Search or browse for a phenotype term to find relevant mutant genotypes.
Human Disease (DO) Browser
Browse for a human disease or condition term to find mouse models. To search use the Quick Search box in the upper right corner of any MGI page.
Human Phenotype (HPO) Browser
Search or browse for a human phenotype term to find relevant human diseases with those phenotypes.
Human – Mouse: Disease Connection (HMDC)
A translational tool designed for exploring and comparing human and mouse phenotypes and their associations with known human diseases, and to provide rapid access to mouse model resources and supporting references.
Gene Expression
Gene Expression Data Standard Search
Search for gene expression results using a variety of search parameters.
Gene Expression Data Differential Expression Search
Search for genes expressed in an anatomical structure and/or developmental stage(s) but not in others.
Gene Expression Data Batch Search
Search for gene expression results using lists of genes.
Mouse Developmental Anatomy Browser
Search or browse for anatomical structures; includes links to associated expression results.
Gene Expression Data Matrix
Use the interactive Tissue by Stage Matrix to access detailed gene expression results.
Gene Expression Literature Query
Search for references on gene expression during development.
GO Functional Annotations
GO Browser
Browse the Gene Ontology and mouse annotations in MGI.
Genes & Markers Query
Search for genes using GO terms and other gene attributes.
Batch Query
Obtain sets of MGI IDs for use in GO tools.
Strains, SNPs & Polymorphisms
Strain Query
Search for strains by name, synonyms, or attributes.
SNP Query
Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.
Multiple Genome Viewer (MGV)
Compare genome features of de novo sequenced mouse strains.
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Sequences
NCBI BLAST
Search for sequence similarity using NCBI BLAST.
JBrowse Genome Browser
Create a graphical display of genome features from regions of the mouse genome.
Batch Query
Download data for a batch of gene IDs or symbols.
References
Reference Query
Search for references (with abstracts) by title, author, journal, year, or abstract.
Gene Expression Literature Query
Search for references on gene expression during development.
Vocabularies
GO Browser
Browse the Gene Ontology and mouse annotations in MGI.
Human Disease (DO) Browser
Browse for a human disease or condition term to find mouse models. To search use the Quick Search box in the upper right corner of any MGI page.
Mammalian Phenotype (MP) Browser
Search or browse for a phenotype term to find relevant mutant genotypes.
Human Phenotype (HPO) Browser
Search or browse for a human phenotype term to find relevant human diseases with those phenotypes.
Mouse Developmental Anatomy Browser
Search or browse for anatomical structures; includes links to associated expression results.
Adult Mouse Anatomy Browser
An extensive Stage 28 dictionary; not yet in use for annotation of expression data.
Other Searches
Recombinase (cre)
Get recombinase (cre) activity data for knock-in and transgene alleles.
Biochemical Pathways
View mouse genomic data in the context of metabolic cellular processes such as biosynthesis, degradation, energy production, and detoxification.
Mouse Tumor Biology
MTB provides information on the frequency, pathology, and genetics of spontaneous and induced tumors in mice.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support.
last database update
12/04/2018
MGI 6.13
The Jackson Laboratory