About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829066
Gene symbol: Ubr5
Gene name: ubiquitin protein ligase E3 component n-recognin 5
Probe: T31769
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010003_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_010003_01
Specimen euxassay_010003_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_02
TS23: neural retina Weak Regionally restricted euxassay_010003_02
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_02
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_02
Specimen euxassay_010003_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_03
TS23: facial ganglion Moderate Regionally restricted euxassay_010003_03
TS23: neural retina Weak Regionally restricted euxassay_010003_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_03
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_03
Specimen euxassay_010003_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: facial ganglion Moderate Regionally restricted euxassay_010003_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_04
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_04
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_04
Specimen euxassay_010003_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_010003_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_05
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_010003_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_05
Specimen euxassay_010003_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_010003_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_010003_06
TS23: vibrissa Moderate Regionally restricted euxassay_010003_06
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_06
Specimen euxassay_010003_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010003_07 facial motor nucleus
TS23: pons mantle layer Moderate Regionally restricted euxassay_010003_07 trigeminal motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_07
TS23: vibrissa Moderate Regionally restricted euxassay_010003_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_07
Specimen euxassay_010003_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010003_08 facial motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_08
TS23: vibrissa Weak Regionally restricted euxassay_010003_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010003_08
Specimen euxassay_010003_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_09
TS23: trigeminal nerve Weak Regionally restricted euxassay_010003_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010003_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_09
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_010003_09
Specimen euxassay_010003_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_10
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_010003_10
Specimen euxassay_010003_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010003_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010003_11
Specimen euxassay_010003_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_12
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_010003_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010003_12
Specimen euxassay_010003_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_13
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010003_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010003_13
Specimen euxassay_010003_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010003_14 facial motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010003_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010003_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010003_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_010003_14
Specimen euxassay_010003_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_15
TS23: vagus ganglion Weak Regionally restricted euxassay_010003_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010003_15 facial motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_010003_15
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_15
Specimen euxassay_010003_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_16
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_16
TS23: trigeminal nerve Weak Regionally restricted euxassay_010003_16
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_010003_16
TS23: pons mantle layer Weak Regionally restricted euxassay_010003_16 trigeminal motor nucleus
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_16
Specimen euxassay_010003_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_17
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_17
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_010003_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010003_17
Specimen euxassay_010003_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_010003_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_18
TS23: facial ganglion Weak Regionally restricted euxassay_010003_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010003_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_18
Specimen euxassay_010003_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_010003_19
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_19
TS23: facial ganglion Weak Regionally restricted euxassay_010003_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_19
Specimen euxassay_010003_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_010003_20
TS23: vibrissa Weak Regionally restricted euxassay_010003_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010003_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010003_20
Specimen euxassay_010003_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_010003_21
TS23: vibrissa Moderate Regionally restricted euxassay_010003_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010003_21
Specimen euxassay_010003_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010003_22
Specimen euxassay_010003_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_010003_23
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010003_23
Specimen euxassay_010003_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_010003_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory