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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828557
Gene symbol: Syngr3
Gene name: synaptogyrin 3
Probe: MGC clone 36037
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003209_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_01
TS23: neural retina Weak Regionally restricted euxassay_003209_01
Specimen euxassay_003209_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_02
TS23: neural retina Weak Regionally restricted euxassay_003209_02
Specimen euxassay_003209_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_03
TS23: neural retina Weak Regionally restricted euxassay_003209_03
Specimen euxassay_003209_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_04
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_04
TS23: neural retina Weak Regionally restricted euxassay_003209_04
Specimen euxassay_003209_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_05
TS23: facial ganglion Strong Regionally restricted euxassay_003209_05
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_05
TS23: hindbrain Moderate Uniform euxassay_003209_05
Specimen euxassay_003209_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_06
TS23: facial ganglion Strong Regionally restricted euxassay_003209_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_003209_06
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_06
TS23: midbrain Moderate Uniform euxassay_003209_06
TS23: hindbrain Moderate Uniform euxassay_003209_06
Specimen euxassay_003209_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_003209_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003209_07
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_07
TS23: diencephalon Moderate Uniform euxassay_003209_07
TS23: midbrain Moderate Uniform euxassay_003209_07
TS23: hindbrain Moderate Uniform euxassay_003209_07
Specimen euxassay_003209_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_003209_08
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_003209_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_08
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_08
TS23: midbrain Moderate Uniform euxassay_003209_08
TS23: hindbrain Moderate Uniform euxassay_003209_08
TS23: diencephalon Moderate Uniform euxassay_003209_08
Specimen euxassay_003209_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_003209_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_09
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_003209_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_09
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_09
TS23: hindbrain Moderate Uniform euxassay_003209_09
TS23: midbrain Moderate Uniform euxassay_003209_09
TS23: diencephalon Moderate Uniform euxassay_003209_09
Specimen euxassay_003209_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003209_10
TS23: cervical ganglion Moderate Regionally restricted euxassay_003209_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_10
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_10
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_10
TS23: hindbrain Moderate Uniform euxassay_003209_10
TS23: midbrain Moderate Uniform euxassay_003209_10
TS23: diencephalon Moderate Uniform euxassay_003209_10
TS23: spinal cord Moderate Regionally restricted euxassay_003209_10
Specimen euxassay_003209_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003209_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_11
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_11
TS23: hindbrain Moderate Uniform euxassay_003209_11
TS23: midbrain Moderate Uniform euxassay_003209_11
TS23: diencephalon Moderate Uniform euxassay_003209_11
TS23: spinal cord Moderate Regionally restricted euxassay_003209_11
Specimen euxassay_003209_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003209_12
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_12
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_12
TS23: hindbrain Moderate Uniform euxassay_003209_12
TS23: midbrain Moderate Uniform euxassay_003209_12
TS23: diencephalon Moderate Uniform euxassay_003209_12
TS23: spinal cord Moderate Regionally restricted euxassay_003209_12
Specimen euxassay_003209_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003209_13
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003209_13
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_13
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_13
TS23: diencephalon Moderate Uniform euxassay_003209_13
TS23: hindbrain Moderate Uniform euxassay_003209_13
TS23: midbrain Moderate Uniform euxassay_003209_13
TS23: spinal cord Moderate Regionally restricted euxassay_003209_13
Specimen euxassay_003209_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003209_14
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_14
TS23: hindbrain Moderate Uniform euxassay_003209_14
TS23: midbrain Moderate Uniform euxassay_003209_14
TS23: diencephalon Moderate Uniform euxassay_003209_14
TS23: spinal cord Moderate Regionally restricted euxassay_003209_14
Specimen euxassay_003209_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003209_15
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_15
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_15
TS23: diencephalon Moderate Uniform euxassay_003209_15
TS23: hindbrain Moderate Uniform euxassay_003209_15
TS23: midbrain Moderate Uniform euxassay_003209_15
TS23: spinal cord Moderate Regionally restricted euxassay_003209_15
Specimen euxassay_003209_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_16
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_16
TS23: midbrain Moderate Uniform euxassay_003209_16
TS23: hindbrain Moderate Uniform euxassay_003209_16
TS23: diencephalon Moderate Uniform euxassay_003209_16
TS23: spinal cord Moderate Regionally restricted euxassay_003209_16
Specimen euxassay_003209_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003209_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_17
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_17
TS23: midbrain Weak Uniform euxassay_003209_17
TS23: hindbrain Weak Uniform euxassay_003209_17
TS23: diencephalon Weak Uniform euxassay_003209_17
TS23: spinal cord Moderate Regionally restricted euxassay_003209_17
Specimen euxassay_003209_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003209_18
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003209_18
TS23: cervical ganglion Moderate Regionally restricted euxassay_003209_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_18
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_18
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_18
TS23: diencephalon Weak Uniform euxassay_003209_18
TS23: hindbrain Weak Uniform euxassay_003209_18
TS23: midbrain Weak Uniform euxassay_003209_18
TS23: spinal cord Moderate Regionally restricted euxassay_003209_18
Specimen euxassay_003209_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_19
TS23: vagus ganglion Strong Regionally restricted euxassay_003209_19
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_003209_19
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003209_19
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_003209_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_19
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_19
TS23: hindbrain Weak Uniform euxassay_003209_19
TS23: midbrain Weak Uniform euxassay_003209_19
TS23: diencephalon Weak Uniform euxassay_003209_19
Specimen euxassay_003209_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_003209_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_20
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_003209_20
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_20
TS23: hindbrain Weak Uniform euxassay_003209_20
TS23: midbrain Weak Uniform euxassay_003209_20
Specimen euxassay_003209_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_21
TS23: facial ganglion Strong Regionally restricted euxassay_003209_21
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_003209_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_21
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_21
TS23: hindbrain Weak Uniform euxassay_003209_21
Specimen euxassay_003209_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_22
TS23: facial ganglion Strong Regionally restricted euxassay_003209_22
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_22
TS23: hindbrain Weak Uniform euxassay_003209_22
Specimen euxassay_003209_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_23
TS23: cornea stroma Moderate Regionally restricted euxassay_003209_23
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_23
Specimen euxassay_003209_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003209_24
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_003209_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003209_24
TS23: neural retina Weak Regionally restricted euxassay_003209_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory