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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828394
Gene symbol: Sox9
Gene name: SRY (sex determining region Y)-box 9
Probe: MGC clone 38472
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002633_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_01
TS23: exoccipital bone Strong Regionally restricted euxassay_002633_01
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002633_01
TS23: basisphenoid bone Strong Regionally restricted euxassay_002633_01
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_002633_01
TS23: lung Moderate Spotted euxassay_002633_01
Specimen euxassay_002633_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_02
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_02
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_02
TS23: orbito-sphenoid Weak Regionally restricted euxassay_002633_02
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_002633_02
TS23: vibrissa Moderate Regionally restricted euxassay_002633_02
TS23: lung Moderate Spotted euxassay_002633_02
Specimen euxassay_002633_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_03
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_002633_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_03
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_03
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_03
TS23: vibrissa Moderate Regionally restricted euxassay_002633_03
TS23: lung Moderate Spotted euxassay_002633_03
Specimen euxassay_002633_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_04
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_04
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_04
TS23: vibrissa Weak Regionally restricted euxassay_002633_04
TS23: lung Moderate Spotted euxassay_002633_04
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002633_04
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_04
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_04
Specimen euxassay_002633_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_002633_05
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_05
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_05
TS23: lung Moderate Spotted euxassay_002633_05
Specimen euxassay_002633_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_06
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_06
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_002633_06
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_06
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_06
TS23: lung Moderate Spotted euxassay_002633_06
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_06
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_06
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_06
Specimen euxassay_002633_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_07
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_07
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_07
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_002633_07
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_07
TS23: lung Moderate Spotted euxassay_002633_07
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_07
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_07
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_07
TS23: femur Weak Regionally restricted euxassay_002633_07
TS23: renal calyx Weak Regionally restricted euxassay_002633_07
Specimen euxassay_002633_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_002633_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_002633_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002633_08
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_08
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_08
TS23: pectoral girdle and thoracic body wall musculature Weak Regionally restricted euxassay_002633_08
TS23: lung Moderate Spotted euxassay_002633_08
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_08
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_08
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_08
TS23: pancreas Weak Regionally restricted euxassay_002633_08
TS23: femur Moderate Regionally restricted euxassay_002633_08
TS23: renal calyx Weak Regionally restricted euxassay_002633_08
Specimen euxassay_002633_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_002633_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_002633_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_09
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002633_09
TS23: lung Moderate Spotted euxassay_002633_09
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_002633_09
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_002633_09
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_002633_09
TS23: pancreas Moderate Regionally restricted euxassay_002633_09
TS23: femur Moderate Regionally restricted euxassay_002633_09
TS23: renal calyx Weak Regionally restricted euxassay_002633_09
Specimen euxassay_002633_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_002633_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_10
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_002633_10
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_002633_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_002633_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_10
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002633_10
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_10
TS23: lung Moderate Spotted euxassay_002633_10
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_10
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_10
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_10
TS23: pancreas Weak Regionally restricted euxassay_002633_10
TS23: femur Moderate Regionally restricted euxassay_002633_10
TS23: nasal septum Strong Regionally restricted euxassay_002633_10
TS23: renal calyx Weak Regionally restricted euxassay_002633_10
Specimen euxassay_002633_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_11
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_002633_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_002633_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_002633_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_002633_11
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_11
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002633_11
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_11
TS23: lung Moderate Spotted euxassay_002633_11
TS23: pancreas Weak Regionally restricted euxassay_002633_11
TS23: nasal septum Strong Regionally restricted euxassay_002633_11
Specimen euxassay_002633_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_12
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_002633_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_002633_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_002633_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_002633_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_12
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_12
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002633_12
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_12
TS23: lung Moderate Spotted euxassay_002633_12
TS23: trachea Strong Regionally restricted euxassay_002633_12
TS23: nasal septum Strong Regionally restricted euxassay_002633_12
Specimen euxassay_002633_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_002633_13
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_002633_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_002633_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_002633_13
TS23: pectoral girdle and thoracic body wall musculature Moderate Regionally restricted euxassay_002633_13
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_13
TS23: lung Moderate Spotted euxassay_002633_13
TS23: pancreas Weak Regionally restricted euxassay_002633_13
TS23: trachea Strong Regionally restricted euxassay_002633_13
TS23: naris Strong Regionally restricted euxassay_002633_13
TS23: nasal septum Strong Regionally restricted euxassay_002633_13
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_002633_13
Specimen euxassay_002633_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_002633_14
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_002633_14
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_002633_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_14
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002633_14
TS23: pectoral girdle and thoracic body wall musculature Weak Regionally restricted euxassay_002633_14
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_14
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_14
TS23: lung Moderate Spotted euxassay_002633_14
TS23: pancreas Weak Regionally restricted euxassay_002633_14
TS23: trachea Strong Regionally restricted euxassay_002633_14
TS23: naris Strong Regionally restricted euxassay_002633_14
TS23: nasal septum Strong Regionally restricted euxassay_002633_14
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_002633_14
Specimen euxassay_002633_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_002633_15
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_15
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_002633_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_002633_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002633_15
TS23: pectoral girdle and thoracic body wall musculature Weak Regionally restricted euxassay_002633_15
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_15
TS23: nucleus pulposus Moderate Regionally restricted euxassay_002633_15
TS23: lung Moderate Spotted euxassay_002633_15
TS23: pancreas Weak Regionally restricted euxassay_002633_15
Specimen euxassay_002633_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_002633_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002633_16
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_16
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_16
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_16
TS23: pectoral girdle and thoracic body wall musculature Weak Regionally restricted euxassay_002633_16
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_16
TS23: lung Weak Spotted euxassay_002633_16
Specimen euxassay_002633_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Regionally restricted euxassay_002633_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_002633_17
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_17
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002633_17
TS23: pectoral girdle and thoracic body wall musculature Moderate Regionally restricted euxassay_002633_17
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_17
TS23: lung Moderate Spotted euxassay_002633_17
TS23: renal calyx Weak Regionally restricted euxassay_002633_17
Specimen euxassay_002633_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_002633_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_18
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_18
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002633_18
TS23: vibrissa Weak Regionally restricted euxassay_002633_18
TS23: lung Moderate Spotted euxassay_002633_18
TS23: renal calyx Weak Regionally restricted euxassay_002633_18
Specimen euxassay_002633_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_002633_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_19
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_19
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_19
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_19
TS23: vibrissa Weak Regionally restricted euxassay_002633_19
TS23: lung Moderate Spotted euxassay_002633_19
TS23: femur Weak Regionally restricted euxassay_002633_19
TS23: renal calyx Weak Regionally restricted euxassay_002633_19
Specimen euxassay_002633_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_002633_20
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_20
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_20
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_002633_20
TS23: vibrissa Weak Regionally restricted euxassay_002633_20
TS23: lung Moderate Spotted euxassay_002633_20
TS23: femur Weak Regionally restricted euxassay_002633_20
TS23: renal calyx Weak Regionally restricted euxassay_002633_20
Specimen euxassay_002633_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_21
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_21
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_21
TS23: lung Moderate Spotted euxassay_002633_21
TS23: femur Moderate Regionally restricted euxassay_002633_21
TS23: renal calyx Moderate Regionally restricted euxassay_002633_21
Specimen euxassay_002633_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_22
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_22
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_22
TS23: lung Weak Spotted euxassay_002633_22
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002633_22
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_22
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_22
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_22
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002633_22
TS23: femur Moderate Regionally restricted euxassay_002633_22
Specimen euxassay_002633_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_002633_23
TS23: exoccipital bone Moderate Regionally restricted euxassay_002633_23
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_002633_23
TS23: basisphenoid bone Moderate Regionally restricted euxassay_002633_23
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_002633_23
TS23: lung Weak Spotted euxassay_002633_23
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002633_23
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002633_23
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002633_23
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002633_23
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002633_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/28/2024
MGI 6.13 		The Jackson Laboratory