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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828386
Gene symbol: Sox1
Gene name: SRY (sex determining region Y)-box 1
Probe: T55183
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019565_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_01
Specimen euxassay_019565_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_02
Specimen euxassay_019565_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_03
Specimen euxassay_019565_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_04
Specimen euxassay_019565_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_05
Specimen euxassay_019565_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019565_06
Specimen euxassay_019565_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_07
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_07
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_07
Specimen euxassay_019565_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019565_08
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_08
Specimen euxassay_019565_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_09
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019565_09
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019565_09
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_09
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_09
Specimen euxassay_019565_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019565_10
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_10
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019565_10
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_10
Specimen euxassay_019565_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_11
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019565_11
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_11
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_11
Specimen euxassay_019565_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_12
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019565_12
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_12
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_12
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_12
Specimen euxassay_019565_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_13
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019565_13
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_13
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_019565_13
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_019565_13
Specimen euxassay_019565_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019565_14
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019565_14
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_14
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_019565_14
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_019565_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_019565_14
Specimen euxassay_019565_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_15
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019565_15
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019565_15
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_019565_15
Specimen euxassay_019565_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_16
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_019565_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_16
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019565_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_019565_16
Specimen euxassay_019565_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_17
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019565_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_17
Specimen euxassay_019565_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_18
TS23: midbrain ventricular layer Strong Uniform euxassay_019565_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_18
Specimen euxassay_019565_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_19
Specimen euxassay_019565_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_20
Specimen euxassay_019565_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_21
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019565_21
Specimen euxassay_019565_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019565_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory