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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828270
Gene symbol: Slc6a9
Gene name: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Probe: MGC clone 18626
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: midbrain Strong
TS23: pons Strong
TS23: medulla oblongata Strong
TS23: brain meninges Strong
Specimen euxassay_003521_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_01
Specimen euxassay_003521_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_02
Specimen euxassay_003521_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_03
Specimen euxassay_003521_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_04
Specimen euxassay_003521_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_05
Specimen euxassay_003521_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_06
TS23: pons ventricular layer Weak Regionally restricted euxassay_003521_06
Specimen euxassay_003521_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_07
TS23: diencephalon meninges Weak Regionally restricted euxassay_003521_07
TS23: midbrain meninges Weak Regionally restricted euxassay_003521_07
TS23: hindbrain meninges Weak Regionally restricted euxassay_003521_07
Specimen euxassay_003521_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_08
TS23: diencephalon meninges Weak Regionally restricted euxassay_003521_08
TS23: hindbrain meninges Weak Regionally restricted euxassay_003521_08
TS23: midbrain meninges Weak Regionally restricted euxassay_003521_08
Specimen euxassay_003521_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_003521_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003521_09
TS23: midbrain meninges Weak Regionally restricted euxassay_003521_09
TS23: hindbrain meninges Weak Regionally restricted euxassay_003521_09
TS23: diencephalon meninges Weak Regionally restricted euxassay_003521_09
TS23: spinal cord meninges Weak Regionally restricted euxassay_003521_09
Specimen euxassay_003521_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Moderate Regionally restricted euxassay_003521_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003521_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_10
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003521_10
TS23: ventral grey horn Strong Single cells euxassay_003521_10
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_003521_10
TS23: spinal cord meninges Moderate Regionally restricted euxassay_003521_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_10
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_10
Specimen euxassay_003521_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003521_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003521_11
TS23: ventral grey horn Strong Single cells euxassay_003521_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_003521_11
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_11
TS23: spinal cord meninges Moderate Regionally restricted euxassay_003521_11
Specimen euxassay_003521_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003521_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003521_12
TS23: ventral grey horn Strong Single cells euxassay_003521_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_003521_12
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_12
TS23: spinal cord meninges Moderate Regionally restricted euxassay_003521_12
Specimen euxassay_003521_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003521_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_13
TS23: spinal cord meninges Moderate Regionally restricted euxassay_003521_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_13
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_13
Specimen euxassay_003521_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_14
TS23: spinal cord meninges Moderate Regionally restricted euxassay_003521_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_14
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_14
Specimen euxassay_003521_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003521_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_15
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_15
Specimen euxassay_003521_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_003521_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_16
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_16
Specimen euxassay_003521_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_17
TS23: pons ventricular layer Weak Regionally restricted euxassay_003521_17
TS23: diencephalon meninges Moderate Regionally restricted euxassay_003521_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003521_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_17
Specimen euxassay_003521_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_18
TS23: midbrain meninges Moderate Regionally restricted euxassay_003521_18
Specimen euxassay_003521_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_19
Specimen euxassay_003521_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_20
Specimen euxassay_003521_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_21
Specimen euxassay_003521_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_003521_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory