About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828208
Gene symbol: Slc36a1
Gene name: solute carrier family 36 (proton/amino acid symporter), member 1
Probe: T56009
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019688_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_019688_04
Specimen euxassay_019688_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_05
TS23: facial ganglion Weak Regionally restricted euxassay_019688_05
TS23: mandible Weak Regionally restricted euxassay_019688_05
TS23: rib Weak Regionally restricted euxassay_019688_05
Specimen euxassay_019688_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_06
TS23: mandible Weak Regionally restricted euxassay_019688_06
TS23: rib Weak Regionally restricted euxassay_019688_06
Specimen euxassay_019688_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_019688_07
TS23: rib Weak Regionally restricted euxassay_019688_07
Specimen euxassay_019688_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019688_08
TS23: pons mantle layer Weak Regionally restricted euxassay_019688_08 trigeminal motor nucleus
TS23: maxilla Weak Regionally restricted euxassay_019688_08
TS23: mandible Weak Regionally restricted euxassay_019688_08
TS23: rib Weak Regionally restricted euxassay_019688_08
Specimen euxassay_019688_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_09
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019688_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_09 facial motor nucleus
TS23: pancreas Weak Regionally restricted euxassay_019688_09
TS23: maxilla Weak Regionally restricted euxassay_019688_09
TS23: mandible Weak Regionally restricted euxassay_019688_09
TS23: rib Weak Regionally restricted euxassay_019688_09
Specimen euxassay_019688_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_019688_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_10 facial motor nucleus
TS23: cervical ganglion Moderate Regionally restricted euxassay_019688_10
TS23: pancreas Weak Regionally restricted euxassay_019688_10
Specimen euxassay_019688_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_11 facial motor nucleus
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_11
TS23: pancreas Weak Regionally restricted euxassay_019688_11
Specimen euxassay_019688_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Weak Regionally restricted euxassay_019688_12
TS23: thyroid gland Weak Regionally restricted euxassay_019688_12
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_12
Specimen euxassay_019688_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_019688_13
TS23: urethra Weak Regionally restricted euxassay_019688_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: rectum Weak Regionally restricted euxassay_019688_13
TS23: thymus primordium Weak Regionally restricted euxassay_019688_13
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_13
Specimen euxassay_019688_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_019688_14
TS23: urethra Weak Regionally restricted euxassay_019688_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Weak Regionally restricted euxassay_019688_14
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_14
Specimen euxassay_019688_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_019688_15
TS23: thymus primordium Weak Regionally restricted euxassay_019688_15
Specimen euxassay_019688_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Weak Regionally restricted euxassay_019688_16
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_16
Specimen euxassay_019688_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_17 facial motor nucleus
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_17
TS23: thymus primordium Weak Regionally restricted euxassay_019688_17
TS23: thyroid gland Weak Regionally restricted euxassay_019688_17
TS23: maxilla Weak Regionally restricted euxassay_019688_17
TS23: mandible Weak Regionally restricted euxassay_019688_17
TS23: ventral grey horn Moderate Regionally restricted euxassay_019688_17
Specimen euxassay_019688_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_18 facial motor nucleus
TS23: cervical ganglion Moderate Regionally restricted euxassay_019688_18
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_18
TS23: maxilla Weak Regionally restricted euxassay_019688_18
TS23: mandible Weak Regionally restricted euxassay_019688_18
Specimen euxassay_019688_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_019688_19
TS23: pons mantle layer Weak Regionally restricted euxassay_019688_19 trigeminal motor nucleus
TS23: mandible Weak Regionally restricted euxassay_019688_19
TS23: maxilla Weak Regionally restricted euxassay_019688_19
Specimen euxassay_019688_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019688_20
TS23: mandible Weak Regionally restricted euxassay_019688_20
Specimen euxassay_019688_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019688_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_019688_21
TS23: maxilla Weak Regionally restricted euxassay_019688_21
TS23: mandible Weak Regionally restricted euxassay_019688_21
TS23: rib Weak Regionally restricted euxassay_019688_21
Specimen euxassay_019688_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_22
TS23: mandible Weak Regionally restricted euxassay_019688_22
TS23: maxilla Weak Regionally restricted euxassay_019688_22
TS23: rib Weak Regionally restricted euxassay_019688_22
Specimen euxassay_019688_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_23
TS23: mandible Weak Regionally restricted euxassay_019688_23
TS23: rib Weak Regionally restricted euxassay_019688_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory