About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828056
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: MH459 probe 283
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_017945_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_02
TS23: neural retina Moderate Regionally restricted euxassay_017945_02
Specimen euxassay_017945_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_03
TS23: lung Strong Regionally restricted euxassay_017945_03
TS23: neural retina Moderate Regionally restricted euxassay_017945_03
TS23: metanephros Moderate Regionally restricted euxassay_017945_03
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_03
TS23: amygdala Present euxassay_017945_03
Specimen euxassay_017945_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_04
TS23: lung Strong Regionally restricted euxassay_017945_04
TS23: midgut Strong Regionally restricted euxassay_017945_04
TS23: metanephros Weak Regionally restricted euxassay_017945_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_04
TS23: amygdala Present euxassay_017945_04
Specimen euxassay_017945_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_05
TS23: lung Strong Regionally restricted euxassay_017945_05
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_05
TS23: midgut Strong Regionally restricted euxassay_017945_05
TS23: metanephros Weak Regionally restricted euxassay_017945_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_05
TS23: amygdala Present euxassay_017945_05
Specimen euxassay_017945_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_06
TS23: lung Strong Regionally restricted euxassay_017945_06
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_06
TS23: midgut Strong Regionally restricted euxassay_017945_06
TS23: metanephros Weak Regionally restricted euxassay_017945_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_06
TS23: amygdala Present euxassay_017945_06
Specimen euxassay_017945_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_07
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_07
TS23: midgut Strong Regionally restricted euxassay_017945_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_07
TS23: amygdala Present euxassay_017945_07
TS23: spinal cord floor plate Weak Regionally restricted euxassay_017945_07
Specimen euxassay_017945_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_08
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_08
TS23: midgut Strong Regionally restricted euxassay_017945_08
TS23: pericardium Weak Spotted euxassay_017945_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_08
TS23: amygdala Present euxassay_017945_08
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_08
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_08
Specimen euxassay_017945_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_09
TS23: bladder Strong Regionally restricted euxassay_017945_09
TS23: urethra Strong Regionally restricted euxassay_017945_09 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Strong Regionally restricted euxassay_017945_09
TS23: hindgut Strong Regionally restricted euxassay_017945_09
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_09
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_09
TS23: pericardium Weak Spotted euxassay_017945_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_09
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_09
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_09
Specimen euxassay_017945_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_10
TS23: bladder Strong Regionally restricted euxassay_017945_10
TS23: urethra Strong Regionally restricted euxassay_017945_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: hindgut Strong Regionally restricted euxassay_017945_10
TS23: midgut Strong Regionally restricted euxassay_017945_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_10
TS23: pericardium Strong Spotted euxassay_017945_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_10
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_10
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_10
Specimen euxassay_017945_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_11
TS23: bladder Strong Regionally restricted euxassay_017945_11
TS23: midgut Strong Regionally restricted euxassay_017945_11
TS23: pericardium Strong Spotted euxassay_017945_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_11
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_11
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_11
Specimen euxassay_017945_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_12
TS23: midgut Strong Regionally restricted euxassay_017945_12
TS23: esophagus Strong Regionally restricted euxassay_017945_12
TS23: trachea Weak Regionally restricted euxassay_017945_12
TS23: pericardium Strong Spotted euxassay_017945_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_12
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_12
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_12
Specimen euxassay_017945_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_13
TS23: midgut Strong Regionally restricted euxassay_017945_13
TS23: esophagus Strong Regionally restricted euxassay_017945_13
TS23: trachea Weak Regionally restricted euxassay_017945_13
TS23: pericardium Strong Spotted euxassay_017945_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_13
Specimen euxassay_017945_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_14
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_14
TS23: midgut Strong Regionally restricted euxassay_017945_14
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_14
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_14
TS23: esophagus Strong Regionally restricted euxassay_017945_14
TS23: trachea Weak Regionally restricted euxassay_017945_14
TS23: pericardium Strong Spotted euxassay_017945_14
TS23: metanephros Weak Regionally restricted euxassay_017945_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: metencephalon floor plate Strong Regionally restricted euxassay_017945_14
TS23: medulla oblongata floor plate Strong Regionally restricted euxassay_017945_14
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_14
Specimen euxassay_017945_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_15
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_15
TS23: midgut Strong Regionally restricted euxassay_017945_15
TS23: stomach Strong Regionally restricted euxassay_017945_15
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_15
TS23: esophagus Strong Regionally restricted euxassay_017945_15
TS23: pericardium Strong Spotted euxassay_017945_15
TS23: metanephros Weak Regionally restricted euxassay_017945_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_15
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: medulla oblongata floor plate Strong Regionally restricted euxassay_017945_15
TS23: metencephalon floor plate Strong Regionally restricted euxassay_017945_15
Specimen euxassay_017945_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_16
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_16
TS23: stomach Strong Regionally restricted euxassay_017945_16
TS23: midgut Strong Regionally restricted euxassay_017945_16
TS23: pericardium Weak Spotted euxassay_017945_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_16
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_16
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_16
Specimen euxassay_017945_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_17
TS23: midgut Strong Regionally restricted euxassay_017945_17
TS23: stomach Strong Regionally restricted euxassay_017945_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_17
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_17
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_17
Specimen euxassay_017945_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_18
TS23: lung Strong Regionally restricted euxassay_017945_18
TS23: stomach Strong Regionally restricted euxassay_017945_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_18
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_18
Specimen euxassay_017945_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_19
TS23: lung Strong Regionally restricted euxassay_017945_19
TS23: stomach Strong Regionally restricted euxassay_017945_19
TS23: lower jaw molar Strong Regionally restricted euxassay_017945_19
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_19
TS23: amygdala Present euxassay_017945_19
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_19
Specimen euxassay_017945_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_20
TS23: lung Strong Regionally restricted euxassay_017945_20
TS23: stomach Strong Regionally restricted euxassay_017945_20
TS23: upper jaw molar Strong Regionally restricted euxassay_017945_20
TS23: lower jaw molar Strong Regionally restricted euxassay_017945_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_20
TS23: amygdala Present euxassay_017945_20
Specimen euxassay_017945_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_21
TS23: stomach Strong Regionally restricted euxassay_017945_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_21
TS23: amygdala Present euxassay_017945_21
Specimen euxassay_017945_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_22
TS23: stomach Strong Regionally restricted euxassay_017945_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_22
TS23: amygdala Present euxassay_017945_22
Specimen euxassay_017945_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_017945_23
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_23
TS23: amygdala Present euxassay_017945_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory