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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827947
Gene symbol: Sema3f
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Probe: T30863
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010600_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_010600_01
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_010600_01
Specimen euxassay_010600_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_010600_02
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_02
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_02
Specimen euxassay_010600_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_010600_03
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_03
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_010600_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_03
Specimen euxassay_010600_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_04
TS23: renal cortex Weak Regionally restricted euxassay_010600_04
TS23: dorsal grey horn Strong Single cells euxassay_010600_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_010600_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_04
Specimen euxassay_010600_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_05
TS23: renal cortex Weak Regionally restricted euxassay_010600_05
TS23: dorsal grey horn Strong Single cells euxassay_010600_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010600_05
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010600_05
Specimen euxassay_010600_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: middle ear mesenchyme Weak Regionally restricted euxassay_010600_06
TS23: renal cortex Weak Regionally restricted euxassay_010600_06
TS23: dorsal grey horn Strong Single cells euxassay_010600_06
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010600_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_06
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010600_06
TS23: pancreas Weak Regionally restricted euxassay_010600_06
Specimen euxassay_010600_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: renal cortex Weak Regionally restricted euxassay_010600_07
TS23: dorsal grey horn Strong Single cells euxassay_010600_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010600_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010600_07
TS23: pancreas Weak Regionally restricted euxassay_010600_07
Specimen euxassay_010600_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Strong Single cells euxassay_010600_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_08
TS23: pituitary gland Weak Regionally restricted euxassay_010600_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010600_08
TS23: pancreas Weak Regionally restricted euxassay_010600_08
Specimen euxassay_010600_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Strong Single cells euxassay_010600_09
TS23: esophagus Weak Regionally restricted euxassay_010600_09
TS23: pituitary gland Weak Regionally restricted euxassay_010600_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010600_09
TS23: pancreas Weak Regionally restricted euxassay_010600_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_010600_09
Specimen euxassay_010600_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Strong Single cells euxassay_010600_10
TS23: esophagus Weak Regionally restricted euxassay_010600_10
TS23: pituitary gland Weak Regionally restricted euxassay_010600_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_010600_10
Specimen euxassay_010600_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder fundus Moderate Regionally restricted euxassay_010600_11
TS23: urethra Moderate Regionally restricted euxassay_010600_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: dorsal grey horn Strong Single cells euxassay_010600_11
TS23: pituitary gland Weak Regionally restricted euxassay_010600_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010600_11
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_010600_11
Specimen euxassay_010600_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder fundus Moderate Regionally restricted euxassay_010600_12
TS23: dorsal grey horn Strong Single cells euxassay_010600_12
TS23: pituitary gland Weak Regionally restricted euxassay_010600_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010600_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_12
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_12
TS23: pancreas Weak Regionally restricted euxassay_010600_12
Specimen euxassay_010600_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder fundus Weak Regionally restricted euxassay_010600_13
TS23: renal cortex Weak Regionally restricted euxassay_010600_13
TS23: pituitary gland Weak Regionally restricted euxassay_010600_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010600_13
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_13
TS23: pancreas Weak Regionally restricted euxassay_010600_13
Specimen euxassay_010600_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: renal cortex Weak Regionally restricted euxassay_010600_14
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_14
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_14
TS23: pancreas Weak Regionally restricted euxassay_010600_14
Specimen euxassay_010600_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_15
TS23: renal cortex Weak Regionally restricted euxassay_010600_15
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010600_15
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010600_15
TS23: pancreas Weak Regionally restricted euxassay_010600_15
Specimen euxassay_010600_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_16
TS23: renal cortex Weak Regionally restricted euxassay_010600_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010600_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010600_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_010600_16
Specimen euxassay_010600_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_17
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_010600_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_010600_17
Specimen euxassay_010600_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010600_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_010600_18
Specimen euxassay_010600_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_010600_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010600_19
Specimen euxassay_010600_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_010600_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory