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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827904
Gene symbol: Scn5a
Gene name: sodium channel, voltage-gated, type V, alpha
Probe: T35295
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007541_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_01
TS23: fibula Moderate Regionally restricted euxassay_007541_01
TS23: tibia Moderate Regionally restricted euxassay_007541_01
TS23: femur Moderate Regionally restricted euxassay_007541_01
TS23: humerus Moderate Regionally restricted euxassay_007541_01
TS23: rib Moderate Regionally restricted euxassay_007541_01
TS23: vault of skull Weak Regionally restricted euxassay_007541_01
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_01
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_007541_01
Specimen euxassay_007541_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_02
TS23: femur Moderate Regionally restricted euxassay_007541_02
TS23: tibia Moderate Regionally restricted euxassay_007541_02
TS23: humerus Strong Regionally restricted euxassay_007541_02
TS23: scapula Strong Regionally restricted euxassay_007541_02
TS23: rib Moderate Regionally restricted euxassay_007541_02
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_02
TS23: vault of skull Weak Regionally restricted euxassay_007541_02
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_02
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_007541_02
Specimen euxassay_007541_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_03
TS23: femur Moderate Regionally restricted euxassay_007541_03
TS23: humerus Moderate Regionally restricted euxassay_007541_03
TS23: scapula Moderate Regionally restricted euxassay_007541_03
TS23: rib Moderate Regionally restricted euxassay_007541_03
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_03
TS23: vault of skull Weak Regionally restricted euxassay_007541_03
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_03
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_03
Specimen euxassay_007541_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_04
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_007541_04
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_007541_04
TS23: femur Moderate Regionally restricted euxassay_007541_04
TS23: humerus Moderate Regionally restricted euxassay_007541_04
TS23: scapula Moderate Regionally restricted euxassay_007541_04
TS23: rib Moderate Regionally restricted euxassay_007541_04
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_04
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_04
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_04
TS23: exoccipital bone Weak Regionally restricted euxassay_007541_04
TS23: vault of skull Weak Regionally restricted euxassay_007541_04
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_04
Specimen euxassay_007541_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_05
TS23: femur Moderate Regionally restricted euxassay_007541_05
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_007541_05
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_007541_05
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_007541_05
TS23: rib Moderate Regionally restricted euxassay_007541_05
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_05
TS23: vault of skull Weak Regionally restricted euxassay_007541_05
TS23: exoccipital bone Weak Regionally restricted euxassay_007541_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_05
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_05
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_05
Specimen euxassay_007541_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_06
TS23: rib Moderate Regionally restricted euxassay_007541_06
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_06
TS23: exoccipital bone Weak Regionally restricted euxassay_007541_06
TS23: basioccipital bone Weak Regionally restricted euxassay_007541_06
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_06
TS23: vault of skull Weak Regionally restricted euxassay_007541_06
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_06
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_007541_06
TS23: clavicle Weak Regionally restricted euxassay_007541_06
Specimen euxassay_007541_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_07
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_007541_07
TS23: rib Moderate Regionally restricted euxassay_007541_07
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_07
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_07
TS23: basioccipital bone Weak Regionally restricted euxassay_007541_07
TS23: vagus ganglion Moderate Regionally restricted euxassay_007541_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_07
TS23: clavicle Weak Regionally restricted euxassay_007541_07
Specimen euxassay_007541_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_08
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_007541_08
TS23: rib Moderate Regionally restricted euxassay_007541_08
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_08
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_08
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_08
TS23: vagus ganglion Moderate Regionally restricted euxassay_007541_08
TS23: clavicle Weak Regionally restricted euxassay_007541_08
Specimen euxassay_007541_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_09
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_09
TS23: rib Moderate Regionally restricted euxassay_007541_09
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_09
TS23: external naris Strong Regionally restricted euxassay_007541_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_09
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_09
TS23: clavicle Weak Regionally restricted euxassay_007541_09
Specimen euxassay_007541_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_10
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_10
TS23: rib Moderate Regionally restricted euxassay_007541_10
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_10
TS23: anterior naris Strong Regionally restricted euxassay_007541_10
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_10
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_10
TS23: nasal septum Weak Regionally restricted euxassay_007541_10
TS23: hyoid Weak Regionally restricted euxassay_007541_10
Specimen euxassay_007541_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_11
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_11
TS23: rib Moderate Regionally restricted euxassay_007541_11
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_007541_11
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_11
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_11
TS23: hyoid Weak Regionally restricted euxassay_007541_11
Specimen euxassay_007541_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_12
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_12
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_12
TS23: nasal septum Weak Regionally restricted euxassay_007541_12
TS23: hyoid Weak Regionally restricted euxassay_007541_12
Specimen euxassay_007541_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_13
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_13
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_13
TS23: anterior naris Strong Regionally restricted euxassay_007541_13
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_13
TS23: nasal septum Weak Regionally restricted euxassay_007541_13
TS23: hyoid Weak Regionally restricted euxassay_007541_13
Specimen euxassay_007541_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_14
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_14
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_14
TS23: external naris Strong Regionally restricted euxassay_007541_14
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_14
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_14
TS23: hyoid Weak Regionally restricted euxassay_007541_14
Specimen euxassay_007541_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_15
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_007541_15
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_15
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_15
TS23: external naris Strong Regionally restricted euxassay_007541_15
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_15
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_15
Specimen euxassay_007541_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_16
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_007541_16
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_16
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_16
TS23: basisphenoid bone Moderate Regionally restricted euxassay_007541_16
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_16
Specimen euxassay_007541_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_17
TS23: femur Moderate Regionally restricted euxassay_007541_17
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_17
TS23: rib Moderate Regionally restricted euxassay_007541_17
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_17
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_007541_17
TS23: clavicle Weak Regionally restricted euxassay_007541_17
Specimen euxassay_007541_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_18
TS23: femur Moderate Regionally restricted euxassay_007541_18
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_18
TS23: rib Moderate Regionally restricted euxassay_007541_18
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_18
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_18
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007541_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_007541_18
TS23: vagus ganglion Moderate Regionally restricted euxassay_007541_18
TS23: clavicle Weak Regionally restricted euxassay_007541_18
Specimen euxassay_007541_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_19
TS23: femur Moderate Regionally restricted euxassay_007541_19
TS23: axial skeleton Moderate Regionally restricted euxassay_007541_19
TS23: rib Moderate Regionally restricted euxassay_007541_19
TS23: Meckel's cartilage Strong Regionally restricted euxassay_007541_19
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_19
TS23: basioccipital bone Weak Regionally restricted euxassay_007541_19
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_19
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_007541_19
TS23: vagus ganglion Moderate Regionally restricted euxassay_007541_19
Specimen euxassay_007541_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_20
TS23: femur Moderate Regionally restricted euxassay_007541_20
TS23: rib Weak Regionally restricted euxassay_007541_20
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_20
TS23: vault of skull Weak Regionally restricted euxassay_007541_20
TS23: basioccipital bone Weak Regionally restricted euxassay_007541_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_20
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_20
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_20
Specimen euxassay_007541_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_21
TS23: femur Moderate Regionally restricted euxassay_007541_21
TS23: rib Moderate Regionally restricted euxassay_007541_21
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_21
TS23: basioccipital bone Weak Regionally restricted euxassay_007541_21
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_21
TS23: vault of skull Weak Regionally restricted euxassay_007541_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_21
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_21
Specimen euxassay_007541_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_22
TS23: femur Moderate Regionally restricted euxassay_007541_22
TS23: scapula Moderate Regionally restricted euxassay_007541_22
TS23: rib Moderate Regionally restricted euxassay_007541_22
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_007541_22
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_22
TS23: vault of skull Weak Regionally restricted euxassay_007541_22
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_22
TS23: trigeminal ganglion Weak Regionally restricted euxassay_007541_22
Specimen euxassay_007541_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_23
TS23: femur Moderate Regionally restricted euxassay_007541_23
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_007541_23
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_007541_23
TS23: humerus Moderate Regionally restricted euxassay_007541_23
TS23: scapula Strong Regionally restricted euxassay_007541_23
TS23: rib Moderate Regionally restricted euxassay_007541_23
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_23
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_23
TS23: vault of skull Weak Regionally restricted euxassay_007541_23
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_007541_23
Specimen euxassay_007541_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_007541_24
TS23: tibia Moderate Regionally restricted euxassay_007541_24
TS23: fibula Moderate Regionally restricted euxassay_007541_24
TS23: femur Moderate Regionally restricted euxassay_007541_24
TS23: humerus Strong Regionally restricted euxassay_007541_24
TS23: scapula Strong Regionally restricted euxassay_007541_24
TS23: rib Moderate Regionally restricted euxassay_007541_24
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007541_24
TS23: vault of skull Weak Regionally restricted euxassay_007541_24
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007541_24
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_007541_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory