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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827903
Gene symbol: Scn3b
Gene name: sodium channel, voltage-gated, type III, beta
Probe: T30384
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012281_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_01
TS23: neural retina Strong Regionally restricted euxassay_012281_01
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_01
Specimen euxassay_012281_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_02
TS23: neural retina Strong Regionally restricted euxassay_012281_02
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_02
TS23: diaphragm Moderate Regionally restricted euxassay_012281_02
Specimen euxassay_012281_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_03
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_03
TS23: diaphragm Strong Regionally restricted euxassay_012281_03
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_03
TS23: upper arm muscle Moderate Regionally restricted euxassay_012281_03
Specimen euxassay_012281_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_04
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_04
TS23: diaphragm Strong Regionally restricted euxassay_012281_04
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_04
TS23: upper arm muscle Moderate Regionally restricted euxassay_012281_04
TS23: midgut Moderate Regionally restricted euxassay_012281_04
Specimen euxassay_012281_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_05
TS23: facial ganglion Strong Regionally restricted euxassay_012281_05
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_05
TS23: rest of cerebellum mantle layer Moderate Uniform euxassay_012281_05
TS23: diaphragm Moderate Regionally restricted euxassay_012281_05
TS23: upper leg muscle Strong Regionally restricted euxassay_012281_05
TS23: upper arm muscle Strong Regionally restricted euxassay_012281_05
TS23: midgut Moderate Regionally restricted euxassay_012281_05
TS23: stomach Moderate Regionally restricted euxassay_012281_05
Specimen euxassay_012281_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_06
TS23: facial ganglion Strong Regionally restricted euxassay_012281_06
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_06
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_06
TS23: rest of cerebellum mantle layer Moderate Uniform euxassay_012281_06
TS23: diaphragm Weak Regionally restricted euxassay_012281_06
TS23: midgut Moderate Regionally restricted euxassay_012281_06
TS23: stomach Moderate Regionally restricted euxassay_012281_06
Specimen euxassay_012281_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_012281_07
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_07
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_07
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_07
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_07
TS23: pons mantle layer Strong Uniform euxassay_012281_07
TS23: midbrain mantle layer Strong Uniform euxassay_012281_07
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_07
TS23: diaphragm Weak Regionally restricted euxassay_012281_07
TS23: midgut Moderate Regionally restricted euxassay_012281_07
TS23: stomach Moderate Regionally restricted euxassay_012281_07
Specimen euxassay_012281_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_08
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012281_08
TS23: trigeminal nerve Moderate Regionally restricted euxassay_012281_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_08
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_012281_08
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_08
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_08
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_08
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_08
TS23: pons mantle layer Strong Uniform euxassay_012281_08
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_08
TS23: midbrain mantle layer Strong Uniform euxassay_012281_08
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_08
TS23: stomach Moderate Regionally restricted euxassay_012281_08
TS23: midgut Moderate Regionally restricted euxassay_012281_08
Specimen euxassay_012281_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_09
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_09
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_09
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_09
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_09
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_09
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_09
TS23: pons mantle layer Strong Uniform euxassay_012281_09
TS23: midbrain mantle layer Strong Uniform euxassay_012281_09
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_09
TS23: cervical ganglion Strong Regionally restricted euxassay_012281_09
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_012281_09
TS23: midgut Moderate Regionally restricted euxassay_012281_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_09
TS23: vomeronasal organ Weak Regionally restricted euxassay_012281_09
Specimen euxassay_012281_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_10
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_10
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_10
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_10
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_10
TS23: midbrain mantle layer Strong Uniform euxassay_012281_10
TS23: pons mantle layer Strong Uniform euxassay_012281_10
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_10
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_10
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_10
TS23: tongue muscle Moderate Regionally restricted euxassay_012281_10
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_012281_10
TS23: midgut Moderate Regionally restricted euxassay_012281_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_10
TS23: vomeronasal organ Moderate Regionally restricted euxassay_012281_10
Specimen euxassay_012281_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_11
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_11
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_11
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_11
TS23: midbrain mantle layer Strong Uniform euxassay_012281_11
TS23: pons mantle layer Strong Uniform euxassay_012281_11
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_11
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_11
TS23: tongue muscle Moderate Regionally restricted euxassay_012281_11
TS23: thoracic ganglion Strong Regionally restricted euxassay_012281_11
TS23: midgut Moderate Regionally restricted euxassay_012281_11
Specimen euxassay_012281_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_12
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_12
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_12
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_12
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_12
TS23: midbrain mantle layer Strong Uniform euxassay_012281_12
TS23: pons mantle layer Strong Uniform euxassay_012281_12
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_12
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_12
TS23: tongue muscle Moderate Regionally restricted euxassay_012281_12
TS23: thoracic ganglion Strong Regionally restricted euxassay_012281_12
TS23: midgut Moderate Regionally restricted euxassay_012281_12
Specimen euxassay_012281_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_13
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_13
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_13
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_13
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_13
TS23: pons mantle layer Strong Uniform euxassay_012281_13
TS23: midbrain mantle layer Strong Uniform euxassay_012281_13
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_13
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_13
TS23: tongue muscle Moderate Regionally restricted euxassay_012281_13
TS23: thoracic ganglion Strong Regionally restricted euxassay_012281_13
TS23: midgut Moderate Regionally restricted euxassay_012281_13
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_13
Specimen euxassay_012281_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_14
TS23: olfactory cortex marginal layer Strong Uniform euxassay_012281_14
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_14
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_14
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_14
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_14
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_14
TS23: pons mantle layer Strong Uniform euxassay_012281_14
TS23: midbrain mantle layer Strong Uniform euxassay_012281_14
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_14
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_14
TS23: diaphragm Weak Regionally restricted euxassay_012281_14
TS23: tongue muscle Moderate Regionally restricted euxassay_012281_14
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_012281_14
TS23: midgut Moderate Regionally restricted euxassay_012281_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_14
Specimen euxassay_012281_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_15
TS23: trigeminal nerve Moderate Regionally restricted euxassay_012281_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_15
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_15
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_15
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_15
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_15
TS23: pons mantle layer Strong Uniform euxassay_012281_15
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_15
TS23: midbrain mantle layer Strong Uniform euxassay_012281_15
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_15
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_15
TS23: diaphragm Moderate Regionally restricted euxassay_012281_15
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_012281_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_15
Specimen euxassay_012281_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_16
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_16
TS23: hypothalamus mantle layer Strong Uniform euxassay_012281_16
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_16
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_16
TS23: midbrain mantle layer Strong Uniform euxassay_012281_16
TS23: pons mantle layer Strong Uniform euxassay_012281_16
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_16
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_16
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_16
TS23: diaphragm Moderate Regionally restricted euxassay_012281_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_012281_16
Specimen euxassay_012281_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_17
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_012281_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012281_17
TS23: diencephalon lateral wall mantle layer Strong Uniform euxassay_012281_17
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_17
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_17
TS23: midbrain mantle layer Strong Uniform euxassay_012281_17
TS23: pons mantle layer Strong Uniform euxassay_012281_17
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_17
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_17
TS23: spinal cord mantle layer Strong Uniform euxassay_012281_17
TS23: diaphragm Moderate Regionally restricted euxassay_012281_17
TS23: cervical ganglion Strong Regionally restricted euxassay_012281_17
Specimen euxassay_012281_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_18
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_012281_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_18
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_012281_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012281_18
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_18
TS23: telencephalon marginal layer Strong Uniform euxassay_012281_18
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_012281_18
TS23: midbrain mantle layer Strong Uniform euxassay_012281_18
TS23: pons mantle layer Strong Uniform euxassay_012281_18
TS23: medulla oblongata basal plate mantle layer Strong Uniform euxassay_012281_18
TS23: diaphragm Moderate Regionally restricted euxassay_012281_18
Specimen euxassay_012281_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_19
TS23: facial ganglion Strong Regionally restricted euxassay_012281_19
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_19
TS23: midbrain mantle layer Moderate Uniform euxassay_012281_19
TS23: rest of cerebellum mantle layer Moderate Uniform euxassay_012281_19
TS23: diaphragm Moderate Regionally restricted euxassay_012281_19
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_19
TS23: upper arm muscle Moderate Regionally restricted euxassay_012281_19
Specimen euxassay_012281_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_012281_20
TS23: neural retina Moderate Regionally restricted euxassay_012281_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_20
TS23: facial ganglion Strong Regionally restricted euxassay_012281_20
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_20
TS23: rest of cerebellum mantle layer Moderate Uniform euxassay_012281_20
TS23: midbrain mantle layer Moderate Uniform euxassay_012281_20
TS23: upper arm muscle Moderate Regionally restricted euxassay_012281_20
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_20
Specimen euxassay_012281_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_21
TS23: neural retina Strong Regionally restricted euxassay_012281_21
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012281_21
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_21
TS23: rest of cerebellum mantle layer Moderate Uniform euxassay_012281_21
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_21
TS23: upper arm muscle Strong Regionally restricted euxassay_012281_21
Specimen euxassay_012281_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_22
TS23: neural retina Strong Regionally restricted euxassay_012281_22
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_22
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_22
TS23: upper arm muscle Moderate Regionally restricted euxassay_012281_22
Specimen euxassay_012281_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_012281_23
TS23: neural retina Weak Regionally restricted euxassay_012281_23
TS23: telencephalon mantle layer Strong Uniform euxassay_012281_23
TS23: upper arm muscle Strong Regionally restricted euxassay_012281_23
TS23: upper leg muscle Moderate Regionally restricted euxassay_012281_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory