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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827858
Gene symbol: Sall1
Gene name: spalt like transcription factor 1
Probe: IMAGE clone 537158
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen S5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: central nervous system Present S5_Sall1 The expression pattern of this gene is consistent with its disease phenotype.
TS23: limb Present S5_Sall1 The expression pattern of this gene is consistent with its disease phenotype.
TS23: nose Present S5_Sall1 The expression pattern of this gene is consistent with its disease phenotype.
TS23: gland Present S5_Sall1 Expression is present in the endocrine system.
TS23: visceral organ system Present Regionally restricted S5_Sall1 Expression is present in the genitourinary system.
Specimen euxassay_000198_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon Moderate Regionally restricted euxassay_000198_01
TS23: telencephalon ventricular layer Present euxassay_000198_01
TS23: hindlimb digit 1 skin Strong Regionally restricted euxassay_000198_01
TS23: hindlimb digit 2 skin Strong Regionally restricted euxassay_000198_01
Specimen euxassay_000198_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hand Strong Regionally restricted euxassay_000198_02
TS23: forelimb digit Present Regionally restricted euxassay_000198_02 skin and mesenchyme in the tip of the fingers
TS23: hindlimb digit 3 skin Strong Regionally restricted euxassay_000198_02
TS23: hip mesenchyme Moderate Uniform euxassay_000198_02
TS23: telencephalon Moderate Regionally restricted euxassay_000198_02
TS23: telencephalon ventricular layer Present euxassay_000198_02
Specimen euxassay_000198_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon Moderate Regionally restricted euxassay_000198_03
TS23: telencephalon ventricular layer Present euxassay_000198_03
TS23: hindlimb digit 3 skin Strong Regionally restricted euxassay_000198_03
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_000198_03
TS23: hip mesenchyme Strong Regionally restricted euxassay_000198_03
TS23: head mesenchyme Strong Regionally restricted euxassay_000198_03
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_03
Specimen euxassay_000198_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_000198_04
TS23: hindlimb digit 3 skin Strong Regionally restricted euxassay_000198_04
TS23: hip mesenchyme Moderate Uniform euxassay_000198_04
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_04
TS23: corpus striatum Moderate Regionally restricted euxassay_000198_04 ventricular layer
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_04
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000198_04
Specimen euxassay_000198_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_06
TS23: corpus striatum Moderate Regionally restricted euxassay_000198_06 ventricular layer
TS23: metencephalon rest of alar plate mantle layer Strong Single cells euxassay_000198_06
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_06
TS23: midbrain mantle layer Strong Single cells euxassay_000198_06
Specimen euxassay_000198_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_07
TS23: corpus striatum Moderate Regionally restricted euxassay_000198_07 ventricular layer
TS23: metencephalon rest of alar plate marginal layer Moderate Single cells euxassay_000198_07
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_000198_07 anterior cerebellum
TS23: midbrain-hindbrain junction Present Regionally restricted euxassay_000198_07 roof plate
TS23: midbrain mantle layer Strong Single cells euxassay_000198_07
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_07
TS23: olfactory epithelium Moderate Uniform euxassay_000198_07
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_07
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_07
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_000198_07
Specimen euxassay_000198_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_08
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_08
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_08
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_08
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000198_08
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000198_08
TS23: medulla oblongata Moderate Single cells euxassay_000198_08
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_08
TS23: midbrain mantle layer Strong Single cells euxassay_000198_08
TS23: midbrain marginal layer Strong Single cells euxassay_000198_08
TS23: midbrain ventricular layer Weak Uniform euxassay_000198_08
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_000198_08
TS23: corpus striatum Weak Regionally restricted euxassay_000198_08 ventricular layer
Specimen euxassay_000198_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_09
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_09
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_09
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_000198_09
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_000198_09
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_000198_09
TS23: pretectum Present Regionally restricted euxassay_000198_09 basal plate
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_000198_09
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_000198_09 anterior vermis
TS23: midbrain-hindbrain junction Present Regionally restricted euxassay_000198_09 roof plate
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000198_09
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_09
TS23: midbrain mantle layer Strong Single cells euxassay_000198_09
TS23: midbrain ventricular layer Weak Graded euxassay_000198_09
TS23: olfactory epithelium Moderate Uniform euxassay_000198_09
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_09
Specimen euxassay_000198_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_10
TS23: diencephalon lateral wall ventricular layer Weak Uniform euxassay_000198_10
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_000198_10
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_000198_10
TS23: pretectum Present Regionally restricted euxassay_000198_10 basal plate
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_10
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_10
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000198_10
TS23: thyroid gland Strong Uniform euxassay_000198_10
TS23: adenohypophysis pars tuberalis Moderate Uniform euxassay_000198_10
Specimen euxassay_000198_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_000198_11
TS23: metencephalon floor plate Moderate Uniform euxassay_000198_11
TS23: medulla oblongata floor plate Moderate Uniform euxassay_000198_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000198_11
TS23: ventral grey horn Moderate Single cells euxassay_000198_11
TS23: thyroid gland isthmus Strong Uniform euxassay_000198_11
TS23: adenohypophysis pars tuberalis Moderate Uniform euxassay_000198_11
Specimen euxassay_000198_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_000198_12
TS23: pretectum Present Regionally restricted euxassay_000198_12 basal plate
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_000198_12
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_000198_12
TS23: medulla oblongata basal plate ventricular layer Weak Uniform euxassay_000198_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_000198_12
TS23: ventral grey horn Moderate Single cells euxassay_000198_12
TS23: spinal cord ventricular layer Moderate Uniform euxassay_000198_12
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_000198_12 mesenchyme in the proximal region: prostate
TS23: thyroid gland isthmus Strong Uniform euxassay_000198_12
TS23: adenohypophysis pars tuberalis Moderate Uniform euxassay_000198_12
Specimen euxassay_000198_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_000198_13 ventral half and root
TS23: thyroid gland isthmus Strong Uniform euxassay_000198_13
TS23: adenohypophysis pars tuberalis Weak Uniform euxassay_000198_13
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_000198_13
TS23: diencephalon lateral wall marginal layer Strong Single cells euxassay_000198_13
TS23: pretectum Present Regionally restricted euxassay_000198_13 basal plate
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_000198_13
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_13
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_13
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_000198_13
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_13
TS23: pons mantle layer Moderate Single cells euxassay_000198_13
TS23: ventral grey horn Moderate Single cells euxassay_000198_13
TS23: spinal cord ventricular layer Moderate Uniform euxassay_000198_13
TS23: olfactory epithelium Moderate Uniform euxassay_000198_13
Specimen euxassay_000198_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_000198_14 ventral half
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_14
TS23: corpus striatum Weak Uniform euxassay_000198_14
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_14
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_14
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_000198_14
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_000198_14 vermis
TS23: midbrain-hindbrain junction Present Regionally restricted euxassay_000198_14 roof plate
TS23: rest of cerebellum ventricular layer Weak Uniform euxassay_000198_14
TS23: pons mantle layer Strong Single cells euxassay_000198_14
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000198_14
TS23: basal columns Moderate Single cells euxassay_000198_14
TS23: ventral grey horn Moderate Single cells euxassay_000198_14
TS23: intermediate grey horn Moderate Single cells euxassay_000198_14
TS23: thyroid gland Strong Uniform euxassay_000198_14
TS23: spinal cord ventricular layer Moderate Uniform euxassay_000198_14
Specimen euxassay_000198_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_15
TS23: corpus striatum Weak Uniform euxassay_000198_15
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000198_15
TS23: medulla oblongata basal plate ventricular layer Weak Uniform euxassay_000198_15
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_000198_15 cerebellar anterior vermis
TS23: midbrain-hindbrain junction Present euxassay_000198_15
TS23: rest of cerebellum ventricular layer Weak Uniform euxassay_000198_15
TS23: pons mantle layer Strong Single cells euxassay_000198_15
TS23: ventral grey horn Moderate Single cells euxassay_000198_15
TS23: intermediate grey horn Moderate Single cells euxassay_000198_15
TS23: thyroid gland Strong Uniform euxassay_000198_15
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_000198_15
TS23: midbrain ventricular layer Weak Uniform euxassay_000198_15
TS23: midbrain mantle layer Strong Single cells euxassay_000198_15
Specimen euxassay_000198_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_16
TS23: corpus striatum Moderate Uniform euxassay_000198_16
TS23: olfactory cortex mantle layer Strong Single cells euxassay_000198_16
TS23: olfactory cortex marginal layer Strong Single cells euxassay_000198_16
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_000198_16
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_16
TS23: medulla oblongata basal plate ventricular layer Weak Uniform euxassay_000198_16
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_000198_16 anterior cerebellum
TS23: midbrain-hindbrain junction Present euxassay_000198_16
TS23: pons mantle layer Moderate Single cells euxassay_000198_16
TS23: midbrain ventricular layer Weak Uniform euxassay_000198_16
TS23: midbrain mantle layer Strong Single cells euxassay_000198_16
TS23: ventral grey horn Moderate Single cells euxassay_000198_16
TS23: intermediate grey horn Moderate Single cells euxassay_000198_16
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_16
Specimen euxassay_000198_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_17
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_17
TS23: corpus striatum Moderate Uniform euxassay_000198_17
TS23: medulla oblongata lateral wall Moderate Single cells euxassay_000198_17
TS23: metencephalon rest of alar plate mantle layer Strong Single cells euxassay_000198_17
TS23: midbrain mantle layer Strong Single cells euxassay_000198_17
TS23: labyrinth epithelium Strong Uniform euxassay_000198_17
Specimen euxassay_000198_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_18
TS23: corpus striatum Moderate Uniform euxassay_000198_18
TS23: metencephalon rest of alar plate mantle layer Strong Single cells euxassay_000198_18
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_18
Specimen euxassay_000198_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 skin Strong Graded euxassay_000198_19
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_19
TS23: corpus striatum Weak Uniform euxassay_000198_19
TS23: labyrinth epithelium Moderate Spotted euxassay_000198_19
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_19
Specimen euxassay_000198_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: maturing glomerular tuft Strong Uniform euxassay_000198_20
TS23: hindlimb digit 1 skin Strong Graded euxassay_000198_20
TS23: labyrinth epithelium Strong Regionally restricted euxassay_000198_20
Specimen euxassay_000198_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_21
TS23: hindlimb digit 1 skin Strong Graded euxassay_000198_21
Specimen euxassay_000198_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_22
Specimen euxassay_000198_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Uniform euxassay_000198_23
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory