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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827790
Gene symbol: Rorb
Gene name: RAR-related orphan receptor beta
Probe: MGC clone 38728
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 6A - Rorb: embryonic day 14.5 (more )
Note: The probe used to generate this specimen was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Present Non-Uniform 6A Rorb , 6A composite
Specimen euxassay_002725_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_01
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_01
Specimen euxassay_002725_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_02
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_02
Specimen euxassay_002725_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_03
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_03
Specimen euxassay_002725_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_04
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_04
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_04
Specimen euxassay_002725_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_05
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_05
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_05
Specimen euxassay_002725_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_06
TS23: hindbrain Strong Regionally restricted euxassay_002725_06
Specimen euxassay_002725_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_07
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_07
TS23: midbrain Strong Regionally restricted euxassay_002725_07
TS23: hindbrain Strong Regionally restricted euxassay_002725_07
Specimen euxassay_002725_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_08
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_08
TS23: midbrain Strong Regionally restricted euxassay_002725_08
TS23: hindbrain Strong Regionally restricted euxassay_002725_08
TS23: diencephalon Strong Regionally restricted euxassay_002725_08
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_08
Specimen euxassay_002725_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_09
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_09
TS23: midbrain Strong Regionally restricted euxassay_002725_09
TS23: hindbrain Strong Regionally restricted euxassay_002725_09
TS23: diencephalon Strong Regionally restricted euxassay_002725_09
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_09
Specimen euxassay_002725_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_10
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_10
TS23: midbrain Strong Regionally restricted euxassay_002725_10
TS23: hindbrain Strong Regionally restricted euxassay_002725_10
TS23: diencephalon Strong Regionally restricted euxassay_002725_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_10
Specimen euxassay_002725_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_11
TS23: diencephalon Strong Regionally restricted euxassay_002725_11
TS23: midbrain Strong Regionally restricted euxassay_002725_11
TS23: hindbrain Strong Regionally restricted euxassay_002725_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_11
Specimen euxassay_002725_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_12
TS23: midbrain Strong Regionally restricted euxassay_002725_12
TS23: hindbrain Strong Regionally restricted euxassay_002725_12
TS23: diencephalon Strong Regionally restricted euxassay_002725_12
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_12
Specimen euxassay_002725_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_13
TS23: midbrain Strong Regionally restricted euxassay_002725_13
TS23: hindbrain Strong Regionally restricted euxassay_002725_13
TS23: diencephalon Strong Regionally restricted euxassay_002725_13
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_13
Specimen euxassay_002725_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_14
TS23: hindbrain Strong Regionally restricted euxassay_002725_14
TS23: diencephalon Strong Regionally restricted euxassay_002725_14
TS23: midbrain Strong Regionally restricted euxassay_002725_14
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_14
Specimen euxassay_002725_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_15
TS23: diencephalon Strong Regionally restricted euxassay_002725_15
TS23: midbrain Strong Regionally restricted euxassay_002725_15
TS23: hindbrain Strong Regionally restricted euxassay_002725_15
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_15
Specimen euxassay_002725_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_16
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_16
TS23: midbrain Strong Regionally restricted euxassay_002725_16
TS23: hindbrain Strong Regionally restricted euxassay_002725_16
TS23: diencephalon Strong Regionally restricted euxassay_002725_16
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_16
Specimen euxassay_002725_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_17
TS23: diencephalon Strong Regionally restricted euxassay_002725_17
TS23: hindbrain Strong Regionally restricted euxassay_002725_17
TS23: midbrain Strong Regionally restricted euxassay_002725_17
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_17
Specimen euxassay_002725_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_18
TS23: diencephalon Strong Regionally restricted euxassay_002725_18
TS23: hindbrain Strong Regionally restricted euxassay_002725_18
TS23: midbrain Strong Regionally restricted euxassay_002725_18
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_18
Specimen euxassay_002725_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_19
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_19
TS23: midbrain Strong Regionally restricted euxassay_002725_19
TS23: hindbrain Strong Regionally restricted euxassay_002725_19
TS23: diencephalon Strong Regionally restricted euxassay_002725_19
TS23: dorsal grey horn Strong Regionally restricted euxassay_002725_19
Specimen euxassay_002725_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_20
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_20
TS23: midbrain Strong Regionally restricted euxassay_002725_20
TS23: hindbrain Strong Regionally restricted euxassay_002725_20
Specimen euxassay_002725_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_21
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_002725_21
TS23: hindbrain Strong Regionally restricted euxassay_002725_21
Specimen euxassay_002725_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_22
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_22
TS23: hindbrain Strong Regionally restricted euxassay_002725_22
Specimen euxassay_002725_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_002725_23
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002725_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory