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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827789
Gene symbol: Rora
Gene name: RAR-related orphan receptor alpha
Probe: T30320
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011505_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_03
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_03
Specimen euxassay_011505_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_011505_04
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_04
Specimen euxassay_011505_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_05
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_011505_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_011505_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_05
Specimen euxassay_011505_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_06
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_06
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_06
Specimen euxassay_011505_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_07
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_07
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_07
Specimen euxassay_011505_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_08
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_08
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_08
Specimen euxassay_011505_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_09
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_09
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_09
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_09
Specimen euxassay_011505_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior naris Moderate Regionally restricted euxassay_011505_10
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_10
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_10
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_10
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_10
Specimen euxassay_011505_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior naris Moderate Regionally restricted euxassay_011505_11
TS23: vibrissa Moderate Regionally restricted euxassay_011505_11
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_11
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_11
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_11
Specimen euxassay_011505_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_12
TS23: thymus primordium Weak Single cells euxassay_011505_12
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_12
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_12
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_12
Specimen euxassay_011505_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Single cells euxassay_011505_13
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_13
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_13
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_13
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_13
Specimen euxassay_011505_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior naris Moderate Regionally restricted euxassay_011505_14
TS23: thymus primordium Moderate Single cells euxassay_011505_14
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_14
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_14
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_14
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_14
Specimen euxassay_011505_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior naris Moderate Regionally restricted euxassay_011505_15
TS23: external naris Moderate Regionally restricted euxassay_011505_15
TS23: vibrissa Moderate Regionally restricted euxassay_011505_15
TS23: thymus primordium Moderate Single cells euxassay_011505_15
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_15
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_15
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_15
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_15
Specimen euxassay_011505_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior naris Moderate Regionally restricted euxassay_011505_16
TS23: thymus primordium Weak Single cells euxassay_011505_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_16
TS23: thalamus mantle layer Strong Regionally restricted euxassay_011505_16
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_16
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_16
Specimen euxassay_011505_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_17
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_011505_17
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_17
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_17
Specimen euxassay_011505_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_18
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_18
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_011505_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_18
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011505_18
Specimen euxassay_011505_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_19
TS23: midbrain mantle layer Moderate Single cells euxassay_011505_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_011505_19
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_19
Specimen euxassay_011505_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_20
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_20
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_20
Specimen euxassay_011505_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_011505_21
TS23: adrenal medulla Weak Regionally restricted euxassay_011505_21
Specimen euxassay_011505_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_22
Specimen euxassay_011505_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_011505_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory