About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827706
Gene symbol: Rfx4
Gene name: regulatory factor X, 4 (influences HLA class II expression)
Probe: T35528
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005798_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_03

Specimen euxassay_005798_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_04
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_04

Specimen euxassay_005798_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_05
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_05

Specimen euxassay_005798_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_06
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_06

Specimen euxassay_005798_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_07

Specimen euxassay_005798_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_08

Specimen euxassay_005798_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_09

Specimen euxassay_005798_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_10

Specimen euxassay_005798_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_11

Specimen euxassay_005798_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005798_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_12

Specimen euxassay_005798_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_005798_13

Specimen euxassay_005798_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_14

Specimen euxassay_005798_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_15

Specimen euxassay_005798_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_16

Specimen euxassay_005798_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_17

Specimen euxassay_005798_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_18

Specimen euxassay_005798_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_19
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_19

Specimen euxassay_005798_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_20
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_20

Specimen euxassay_005798_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_21
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_21
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_21

Specimen euxassay_005798_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_22
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_22

Specimen euxassay_005798_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_23


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
05/07/2024
MGI 6.23
The Jackson Laboratory