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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827706
Gene symbol: Rfx4
Gene name: regulatory factor X, 4 (influences HLA class II expression)
Probe: T35528
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005798_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_03
Specimen euxassay_005798_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_04
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_04
Specimen euxassay_005798_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_05
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_05
Specimen euxassay_005798_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_06
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_06
Specimen euxassay_005798_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_07
Specimen euxassay_005798_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_08
Specimen euxassay_005798_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_09
Specimen euxassay_005798_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_10
Specimen euxassay_005798_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_11
Specimen euxassay_005798_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005798_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_12
Specimen euxassay_005798_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_005798_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_005798_13
Specimen euxassay_005798_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_14
Specimen euxassay_005798_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_15
Specimen euxassay_005798_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_16
Specimen euxassay_005798_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_17
Specimen euxassay_005798_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_005798_18
Specimen euxassay_005798_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_19
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_19
Specimen euxassay_005798_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_20
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_20
Specimen euxassay_005798_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_005798_21
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_21
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_005798_21
Specimen euxassay_005798_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_22
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_005798_22
Specimen euxassay_005798_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_005798_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory