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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827616
Gene symbol: Rarb
Gene name: retinoic acid receptor, beta
Probe: IMAGE clone 2065364
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000777_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_01
TS23: corpus striatum Present euxassay_000777_01
TS23: stomach Moderate Regionally restricted euxassay_000777_01 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_01
TS23: limb Moderate Regionally restricted euxassay_000777_01
TS23: limb musculature Present euxassay_000777_01
Specimen euxassay_000777_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_02
TS23: corpus striatum Present euxassay_000777_02
TS23: stomach Moderate Regionally restricted euxassay_000777_02 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_02
TS23: limb Moderate Regionally restricted euxassay_000777_02
TS23: limb musculature Present euxassay_000777_02
Specimen euxassay_000777_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_03
TS23: corpus striatum Present euxassay_000777_03
TS23: stomach Moderate Regionally restricted euxassay_000777_03 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_03
TS23: limb Moderate Regionally restricted euxassay_000777_03
TS23: limb musculature Present euxassay_000777_03
Specimen euxassay_000777_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_04
TS23: corpus striatum Present euxassay_000777_04
TS23: stomach Moderate Regionally restricted euxassay_000777_04 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_04
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_04
TS23: limb Moderate Regionally restricted euxassay_000777_04
TS23: limb musculature Present euxassay_000777_04
Specimen euxassay_000777_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_05
TS23: corpus striatum Present euxassay_000777_05
TS23: stomach Moderate Regionally restricted euxassay_000777_05 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_05
TS23: upper jaw molar Weak Regionally restricted euxassay_000777_05
TS23: lower jaw molar Weak Regionally restricted euxassay_000777_05
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_05
TS23: limb Moderate Regionally restricted euxassay_000777_05
TS23: limb musculature Present euxassay_000777_05
Specimen euxassay_000777_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_000777_06 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_06
TS23: upper jaw molar Weak Regionally restricted euxassay_000777_06
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_06
Specimen euxassay_000777_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_000777_07 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_07
TS23: renal calyx Weak Regionally restricted euxassay_000777_07
TS23: lower jaw molar Weak Regionally restricted euxassay_000777_07
TS23: midgut Weak Regionally restricted euxassay_000777_07 smooth muscle
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_07
Specimen euxassay_000777_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_000777_08 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_08
TS23: renal calyx Weak Regionally restricted euxassay_000777_08
TS23: upper jaw molar Weak Regionally restricted euxassay_000777_08
TS23: lower jaw molar Weak Regionally restricted euxassay_000777_08
TS23: midgut Weak Regionally restricted euxassay_000777_08 smooth muscle
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_08
Specimen euxassay_000777_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_000777_09 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_09
TS23: renal calyx Weak Regionally restricted euxassay_000777_09
TS23: upper jaw molar Weak Regionally restricted euxassay_000777_09
TS23: lower jaw molar Weak Regionally restricted euxassay_000777_09
TS23: midgut Weak Regionally restricted euxassay_000777_09 smooth muscle
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_09
Specimen euxassay_000777_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: renal calyx Weak Regionally restricted euxassay_000777_10
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_10
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_10
TS23: midgut Weak Regionally restricted euxassay_000777_10 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_10 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_10
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_10
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_10
Specimen euxassay_000777_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_11
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_11
TS23: bladder Weak Regionally restricted euxassay_000777_11
TS23: midgut Weak Regionally restricted euxassay_000777_11 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_11 smooth muscle
TS23: foregut-midgut junction Weak Regionally restricted euxassay_000777_11 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_11
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_11
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_11
Specimen euxassay_000777_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_12
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_12
TS23: bladder Weak Regionally restricted euxassay_000777_12
TS23: urethra Weak Regionally restricted euxassay_000777_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_000777_12 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_12 smooth muscle
TS23: foregut-midgut junction Weak Regionally restricted euxassay_000777_12 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_12
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_12
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_12
Specimen euxassay_000777_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_13
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_13
TS23: bladder Weak Regionally restricted euxassay_000777_13
TS23: urethra Weak Regionally restricted euxassay_000777_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_000777_13 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_13 smooth muscle
TS23: foregut-midgut junction Weak Regionally restricted euxassay_000777_13 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_13
TS23: esophagus Weak Regionally restricted euxassay_000777_13
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_13
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_13
Specimen euxassay_000777_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_14
TS23: bladder Weak Regionally restricted euxassay_000777_14
TS23: urethra Weak Regionally restricted euxassay_000777_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_000777_14 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_14 smooth muscle
TS23: foregut-midgut junction Weak Regionally restricted euxassay_000777_14 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_14
TS23: esophagus Weak Regionally restricted euxassay_000777_14
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_14
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_14
Specimen euxassay_000777_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_000777_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_000777_15
TS23: bladder Weak Regionally restricted euxassay_000777_15
TS23: midgut Weak Regionally restricted euxassay_000777_15 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_15 smooth muscle
TS23: foregut-midgut junction Weak Regionally restricted euxassay_000777_15 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_15
TS23: esophagus Weak Regionally restricted euxassay_000777_15
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_15
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_15
Specimen euxassay_000777_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_16
TS23: corpus striatum Present euxassay_000777_16
TS23: lower jaw molar Moderate Regionally restricted euxassay_000777_16
TS23: midgut Weak Regionally restricted euxassay_000777_16 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_000777_16 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_16
TS23: dorsal grey horn Weak Regionally restricted euxassay_000777_16
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_16
Specimen euxassay_000777_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_17
TS23: corpus striatum Present euxassay_000777_17
TS23: renal calyx Weak Regionally restricted euxassay_000777_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_000777_17
TS23: midgut Weak Regionally restricted euxassay_000777_17 smooth muscle
TS23: smooth muscle tissue Present euxassay_000777_17
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_17
Specimen euxassay_000777_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_18
TS23: corpus striatum Present euxassay_000777_18
TS23: renal calyx Weak Regionally restricted euxassay_000777_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_000777_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_000777_18
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_18
Specimen euxassay_000777_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_19
TS23: corpus striatum Present euxassay_000777_19
TS23: renal calyx Weak Regionally restricted euxassay_000777_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_000777_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_000777_19
TS23: nasal capsule Moderate Regionally restricted euxassay_000777_19
Specimen euxassay_000777_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000777_20
TS23: corpus striatum Present euxassay_000777_20
TS23: renal calyx Weak Regionally restricted euxassay_000777_20
TS23: lower jaw molar Moderate Regionally restricted euxassay_000777_20
TS23: upper jaw molar Moderate Regionally restricted euxassay_000777_20
TS23: limb Moderate Regionally restricted euxassay_000777_20
TS23: limb musculature Present euxassay_000777_20
Specimen euxassay_000777_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: renal calyx Weak Regionally restricted euxassay_000777_21
TS23: limb Moderate Regionally restricted euxassay_000777_21
TS23: limb musculature Present euxassay_000777_21
Specimen euxassay_000777_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Moderate Regionally restricted euxassay_000777_22
TS23: limb musculature Present euxassay_000777_22
Specimen euxassay_000777_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Moderate Regionally restricted euxassay_000777_23
TS23: limb musculature Present euxassay_000777_23
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory