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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827614
Gene symbol: Rapgef6
Gene name: Rap guanine nucleotide exchange factor (GEF) 6
Probe: T37969
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_014450_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_02
Specimen euxassay_014450_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_03
TS23: facial ganglion Moderate Single cells euxassay_014450_03
TS23: pons mantle layer Moderate Single cells euxassay_014450_03
Specimen euxassay_014450_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_04
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_014450_04
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_014450_04
TS23: dorsal root ganglion Weak Single cells euxassay_014450_04
TS23: pons mantle layer Moderate Single cells euxassay_014450_04
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_04
Specimen euxassay_014450_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_05
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_014450_05
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_014450_05
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_05
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_05
TS23: pons mantle layer Moderate Single cells euxassay_014450_05
TS23: midbrain mantle layer Weak Single cells euxassay_014450_05
Specimen euxassay_014450_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Single cells euxassay_014450_06
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_06
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_014450_06
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_06
TS23: ventral grey horn Moderate Single cells euxassay_014450_06
TS23: pons mantle layer Moderate Single cells euxassay_014450_06
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_06
TS23: midbrain mantle layer Weak Single cells euxassay_014450_06
Specimen euxassay_014450_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_07
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_07
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_014450_07
TS23: ventral grey horn Moderate Single cells euxassay_014450_07
TS23: pons mantle layer Moderate Single cells euxassay_014450_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_07
TS23: midbrain mantle layer Weak Single cells euxassay_014450_07
Specimen euxassay_014450_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Weak Single cells euxassay_014450_08
TS23: dorsal root ganglion Weak Single cells euxassay_014450_08
TS23: ventral grey horn Moderate Single cells euxassay_014450_08
TS23: pons mantle layer Moderate Single cells euxassay_014450_08
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_08
Specimen euxassay_014450_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Single cells euxassay_014450_09
Specimen euxassay_014450_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_10
TS23: ventral grey horn Moderate Single cells euxassay_014450_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_10
TS23: midbrain mantle layer Moderate Single cells euxassay_014450_10
Specimen euxassay_014450_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_11
TS23: ventral grey horn Moderate Single cells euxassay_014450_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014450_11
TS23: midbrain mantle layer Moderate Single cells euxassay_014450_11
Specimen euxassay_014450_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_12
TS23: thoracic ganglion Weak Regionally restricted euxassay_014450_12
TS23: ventral grey horn Moderate Single cells euxassay_014450_12
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_014450_12
TS23: midbrain mantle layer Weak Single cells euxassay_014450_12
Specimen euxassay_014450_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_014450_13
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_014450_13
TS23: ventral grey horn Moderate Single cells euxassay_014450_13
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_014450_13
TS23: pons mantle layer Weak Single cells euxassay_014450_13
TS23: midbrain mantle layer Weak Single cells euxassay_014450_13
Specimen euxassay_014450_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_14
TS23: thoracic ganglion Weak Regionally restricted euxassay_014450_14
TS23: ventral grey horn Moderate Single cells euxassay_014450_14
TS23: pons mantle layer Weak Single cells euxassay_014450_14
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_014450_14
TS23: midbrain mantle layer Weak Single cells euxassay_014450_14
Specimen euxassay_014450_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_15
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_014450_15
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_014450_15
TS23: trigeminal nerve Weak Single cells euxassay_014450_15
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_15
TS23: ventral grey horn Moderate Single cells euxassay_014450_15
TS23: pons mantle layer Weak Single cells euxassay_014450_15
Specimen euxassay_014450_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_16
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_014450_16
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_16
TS23: ventral grey horn Moderate Single cells euxassay_014450_16
TS23: pons mantle layer Weak Single cells euxassay_014450_16
Specimen euxassay_014450_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_17
TS23: facial ganglion Moderate Single cells euxassay_014450_17
TS23: dorsal root ganglion Moderate Single cells euxassay_014450_17
Specimen euxassay_014450_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_18
TS23: facial ganglion Moderate Single cells euxassay_014450_18
Specimen euxassay_014450_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_19
Specimen euxassay_014450_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_014450_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory