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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827498
Gene symbol: Ptch1
Gene name: patched 1
Probe: T63072
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_017091_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_01
TS23: radius Weak Regionally restricted euxassay_017091_01
TS23: ulna Weak Regionally restricted euxassay_017091_01
Specimen euxassay_017091_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_017091_02
TS23: humerus Weak Regionally restricted euxassay_017091_02
TS23: scapula Weak Regionally restricted euxassay_017091_02
TS23: radius Weak Regionally restricted euxassay_017091_02
Specimen euxassay_017091_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_017091_03
TS23: humerus Weak Regionally restricted euxassay_017091_03
TS23: scapula Weak Regionally restricted euxassay_017091_03
TS23: radius Weak Regionally restricted euxassay_017091_03
TS23: lung Moderate Regionally restricted euxassay_017091_03
TS23: mandible Moderate Regionally restricted euxassay_017091_03
TS23: stomach Weak Regionally restricted euxassay_017091_03
Specimen euxassay_017091_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_017091_04
TS23: humerus Weak Regionally restricted euxassay_017091_04
TS23: radius Weak Regionally restricted euxassay_017091_04
TS23: lung Moderate Regionally restricted euxassay_017091_04
TS23: mandible Moderate Regionally restricted euxassay_017091_04
TS23: stomach Weak Regionally restricted euxassay_017091_04
Specimen euxassay_017091_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_05
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_017091_05
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_017091_05
TS23: lung Moderate Regionally restricted euxassay_017091_05
TS23: mandible Moderate Regionally restricted euxassay_017091_05
TS23: maxilla Weak Regionally restricted euxassay_017091_05
TS23: stomach Weak Regionally restricted euxassay_017091_05
Specimen euxassay_017091_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_06
TS23: fibula Moderate Regionally restricted euxassay_017091_06
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_017091_06
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_017091_06
TS23: lung Moderate Regionally restricted euxassay_017091_06
TS23: maxilla Weak Regionally restricted euxassay_017091_06
TS23: mandible Weak Regionally restricted euxassay_017091_06
TS23: stomach Weak Regionally restricted euxassay_017091_06
Specimen euxassay_017091_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_07
TS23: axial skeleton Moderate Regionally restricted euxassay_017091_07
TS23: forelimb digit 3 phalanx Weak Regionally restricted euxassay_017091_07
TS23: forelimb digit 2 phalanx Weak Regionally restricted euxassay_017091_07
TS23: forelimb digit 1 phalanx Weak Regionally restricted euxassay_017091_07
TS23: fibula Moderate Regionally restricted euxassay_017091_07
TS23: tibia Moderate Regionally restricted euxassay_017091_07
TS23: femur Weak Regionally restricted euxassay_017091_07
TS23: lung Moderate Regionally restricted euxassay_017091_07
TS23: maxilla Weak Regionally restricted euxassay_017091_07
TS23: mandible Weak Regionally restricted euxassay_017091_07
TS23: clavicle Weak Regionally restricted euxassay_017091_07
TS23: vibrissa Moderate Regionally restricted euxassay_017091_07
TS23: stomach Weak Regionally restricted euxassay_017091_07
Specimen euxassay_017091_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_08
TS23: forelimb digit 3 phalanx Weak Regionally restricted euxassay_017091_08
TS23: forelimb digit 2 phalanx Weak Regionally restricted euxassay_017091_08
TS23: tibia Moderate Regionally restricted euxassay_017091_08
TS23: fibula Moderate Regionally restricted euxassay_017091_08
TS23: femur Moderate Regionally restricted euxassay_017091_08
TS23: lung Moderate Regionally restricted euxassay_017091_08
TS23: maxilla Weak Regionally restricted euxassay_017091_08
TS23: mandible Weak Regionally restricted euxassay_017091_08
TS23: clavicle Moderate Regionally restricted euxassay_017091_08
TS23: vibrissa Moderate Regionally restricted euxassay_017091_08
TS23: stomach Weak Regionally restricted euxassay_017091_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_017091_08
Specimen euxassay_017091_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_09
TS23: foot mesenchyme Weak Regionally restricted euxassay_017091_09
TS23: forelimb digit 3 phalanx Weak Regionally restricted euxassay_017091_09
TS23: forelimb digit 2 phalanx Weak Regionally restricted euxassay_017091_09
TS23: lung Moderate Regionally restricted euxassay_017091_09
TS23: mandible Weak Regionally restricted euxassay_017091_09
TS23: maxilla Weak Regionally restricted euxassay_017091_09
TS23: clavicle Moderate Regionally restricted euxassay_017091_09
TS23: vibrissa Moderate Regionally restricted euxassay_017091_09
TS23: stomach Weak Regionally restricted euxassay_017091_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017091_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_017091_09
Specimen euxassay_017091_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_10
TS23: foot mesenchyme Weak Regionally restricted euxassay_017091_10
TS23: lung Moderate Regionally restricted euxassay_017091_10
TS23: mandible Weak Regionally restricted euxassay_017091_10
TS23: maxilla Weak Regionally restricted euxassay_017091_10
TS23: vibrissa Moderate Regionally restricted euxassay_017091_10
TS23: basioccipital bone Weak Regionally restricted euxassay_017091_10
TS23: stomach Weak Regionally restricted euxassay_017091_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017091_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_017091_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017091_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_017091_10
Specimen euxassay_017091_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_017091_11
TS23: maxilla Weak Regionally restricted euxassay_017091_11
TS23: mandible Weak Regionally restricted euxassay_017091_11
TS23: vibrissa Moderate Regionally restricted euxassay_017091_11
TS23: basioccipital bone Weak Regionally restricted euxassay_017091_11
TS23: basisphenoid bone Weak Regionally restricted euxassay_017091_11
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_017091_11
TS23: stomach Weak Regionally restricted euxassay_017091_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_017091_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017091_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017091_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_017091_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_017091_11
Specimen euxassay_017091_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_017091_12
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_017091_12
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_017091_12
TS23: lung Moderate Regionally restricted euxassay_017091_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_017091_12
TS23: upper jaw incisor Weak Regionally restricted euxassay_017091_12
TS23: esophagus Strong Regionally restricted euxassay_017091_12
TS23: basisphenoid bone Moderate Regionally restricted euxassay_017091_12
TS23: basioccipital bone Moderate Regionally restricted euxassay_017091_12
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_017091_12
TS23: stomach Weak Regionally restricted euxassay_017091_12
TS23: nephric duct of male Weak Regionally restricted euxassay_017091_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_017091_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_017091_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_017091_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_017091_12
Specimen euxassay_017091_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_017091_13
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_017091_13
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_017091_13
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_017091_13
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_017091_13
TS23: lung Moderate Regionally restricted euxassay_017091_13
TS23: lower jaw incisor Weak Regionally restricted euxassay_017091_13
TS23: basioccipital bone Moderate Regionally restricted euxassay_017091_13
TS23: nephric duct of male Weak Regionally restricted euxassay_017091_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017091_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_017091_13
Specimen euxassay_017091_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_14
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_017091_14
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_017091_14
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_017091_14
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_017091_14
TS23: lung Moderate Regionally restricted euxassay_017091_14
TS23: upper jaw incisor Weak Regionally restricted euxassay_017091_14
TS23: basioccipital bone Moderate Regionally restricted euxassay_017091_14
TS23: basisphenoid bone Weak Regionally restricted euxassay_017091_14
TS23: midgut Moderate Regionally restricted euxassay_017091_14
TS23: nephric duct of male Weak Regionally restricted euxassay_017091_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_017091_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_017091_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_017091_14
Specimen euxassay_017091_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_15
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_017091_15
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_017091_15
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_017091_15
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_017091_15
TS23: lung Moderate Regionally restricted euxassay_017091_15
TS23: upper jaw incisor Weak Regionally restricted euxassay_017091_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_017091_15
TS23: basisphenoid bone Weak Regionally restricted euxassay_017091_15
TS23: basioccipital bone Weak Regionally restricted euxassay_017091_15
TS23: midgut Moderate Regionally restricted euxassay_017091_15
TS23: bladder Moderate Regionally restricted euxassay_017091_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_017091_15
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_017091_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_15
Specimen euxassay_017091_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Weak Regionally restricted euxassay_017091_16
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_017091_16
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_017091_16
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_017091_16
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_017091_16
TS23: lung Moderate Regionally restricted euxassay_017091_16
TS23: maxilla Weak Regionally restricted euxassay_017091_16
TS23: mandible Weak Regionally restricted euxassay_017091_16
TS23: upper jaw incisor Weak Regionally restricted euxassay_017091_16
TS23: lower jaw incisor Weak Regionally restricted euxassay_017091_16
TS23: clavicle Weak Regionally restricted euxassay_017091_16
TS23: midgut Moderate Regionally restricted euxassay_017091_16
TS23: hindgut Moderate Regionally restricted euxassay_017091_16
TS23: bladder Moderate Regionally restricted euxassay_017091_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_017091_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_16
Specimen euxassay_017091_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_017091_17
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_017091_17
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_017091_17
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_017091_17
TS23: lung Moderate Regionally restricted euxassay_017091_17
TS23: maxilla Weak Regionally restricted euxassay_017091_17
TS23: mandible Weak Regionally restricted euxassay_017091_17
TS23: lower jaw incisor Weak Regionally restricted euxassay_017091_17
TS23: upper jaw incisor Weak Regionally restricted euxassay_017091_17
TS23: clavicle Moderate Regionally restricted euxassay_017091_17
TS23: urethra Weak Regionally restricted euxassay_017091_17 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: hindgut Moderate Regionally restricted euxassay_017091_17
TS23: midgut Moderate Regionally restricted euxassay_017091_17
TS23: nephric duct of male Weak Regionally restricted euxassay_017091_17
TS23: bladder Moderate Regionally restricted euxassay_017091_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017091_17
Specimen euxassay_017091_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_18
TS23: lung Moderate Regionally restricted euxassay_017091_18
TS23: maxilla Moderate Regionally restricted euxassay_017091_18
TS23: mandible Moderate Regionally restricted euxassay_017091_18
TS23: clavicle Weak Regionally restricted euxassay_017091_18
TS23: urethra Moderate Regionally restricted euxassay_017091_18 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: tail skeleton Weak Regionally restricted euxassay_017091_18
TS23: midgut Moderate Regionally restricted euxassay_017091_18
TS23: hindgut Moderate Regionally restricted euxassay_017091_18
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_017091_18
Specimen euxassay_017091_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_19
TS23: lung Moderate Regionally restricted euxassay_017091_19
TS23: mandible Moderate Regionally restricted euxassay_017091_19
TS23: maxilla Moderate Regionally restricted euxassay_017091_19
TS23: urethra Moderate Regionally restricted euxassay_017091_19 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_017091_19
TS23: tail skeleton Weak Regionally restricted euxassay_017091_19
TS23: midgut Moderate Regionally restricted euxassay_017091_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_017091_19
Specimen euxassay_017091_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_017091_20
TS23: scapula Weak Regionally restricted euxassay_017091_20
TS23: lung Moderate Regionally restricted euxassay_017091_20
TS23: mandible Weak Regionally restricted euxassay_017091_20
TS23: maxilla Moderate Regionally restricted euxassay_017091_20
TS23: vibrissa Moderate Regionally restricted euxassay_017091_20
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_017091_20
TS23: tail skeleton Weak Regionally restricted euxassay_017091_20
TS23: midgut Moderate Regionally restricted euxassay_017091_20
Specimen euxassay_017091_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_21
TS23: scapula Weak Regionally restricted euxassay_017091_21
TS23: lung Moderate Regionally restricted euxassay_017091_21
TS23: maxilla Moderate Regionally restricted euxassay_017091_21
TS23: mandible Moderate Regionally restricted euxassay_017091_21
TS23: vibrissa Moderate Regionally restricted euxassay_017091_21
TS23: tail skeleton Weak Regionally restricted euxassay_017091_21
TS23: midgut Moderate Regionally restricted euxassay_017091_21
Specimen euxassay_017091_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_22
TS23: humerus Weak Regionally restricted euxassay_017091_22
TS23: scapula Weak Regionally restricted euxassay_017091_22
TS23: lung Moderate Regionally restricted euxassay_017091_22
TS23: maxilla Moderate Regionally restricted euxassay_017091_22
TS23: mandible Moderate Regionally restricted euxassay_017091_22
TS23: vibrissa Moderate Regionally restricted euxassay_017091_22
TS23: tail skeleton Weak Regionally restricted euxassay_017091_22
TS23: midgut Weak Regionally restricted euxassay_017091_22
Specimen euxassay_017091_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_017091_23
TS23: humerus Weak Regionally restricted euxassay_017091_23
TS23: scapula Weak Regionally restricted euxassay_017091_23
TS23: forelimb digit 3 phalanx Weak Regionally restricted euxassay_017091_23
TS23: forelimb digit 2 phalanx Weak Regionally restricted euxassay_017091_23
TS23: lung Moderate Regionally restricted euxassay_017091_23
TS23: mandible Moderate Regionally restricted euxassay_017091_23
TS23: maxilla Moderate Regionally restricted euxassay_017091_23
TS23: vibrissa Moderate Regionally restricted euxassay_017091_23
TS23: tail skeleton Weak Regionally restricted euxassay_017091_23
TS23: midgut Weak Regionally restricted euxassay_017091_23
Specimen euxassay_017091_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_017091_24
TS23: forelimb digit 3 phalanx Weak Regionally restricted euxassay_017091_24
TS23: forelimb digit 2 phalanx Weak Regionally restricted euxassay_017091_24
TS23: tail skeleton Weak Regionally restricted euxassay_017091_24
TS23: midgut Weak Regionally restricted euxassay_017091_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory