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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827349
Gene symbol: Ppargc1a
Gene name: peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Probe: MGC clone 76741
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006699_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_01
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_01
TS23: amygdala Present euxassay_006699_01
Specimen euxassay_006699_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_02
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_02
TS23: amygdala Present euxassay_006699_02
Specimen euxassay_006699_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_03
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_03
TS23: amygdala Present euxassay_006699_03
Specimen euxassay_006699_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_04
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_04
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_006699_04
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_006699_04
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_006699_04
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_006699_04
Specimen euxassay_006699_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_05
TS23: vibrissa Weak Regionally restricted euxassay_006699_05
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006699_05
TS23: amygdala Present euxassay_006699_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_05
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_006699_05
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_006699_05
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_006699_05
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_006699_05
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_006699_05
Specimen euxassay_006699_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_06
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_06
TS23: vibrissa Weak Regionally restricted euxassay_006699_06
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006699_06
TS23: amygdala Present euxassay_006699_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_06
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_006699_06
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_006699_06
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_006699_06
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_006699_06
Specimen euxassay_006699_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: heart left ventricle Moderate Regionally restricted euxassay_006699_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_006699_07
TS23: renal calyx Moderate Regionally restricted euxassay_006699_07
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_07
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_07
TS23: vibrissa Weak Regionally restricted euxassay_006699_07
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_07
TS23: amygdala Present euxassay_006699_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_07
Specimen euxassay_006699_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart left ventricle Moderate Regionally restricted euxassay_006699_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_006699_08
TS23: renal calyx Moderate Regionally restricted euxassay_006699_08
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_08
TS23: vibrissa Weak Regionally restricted euxassay_006699_08
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_08
TS23: oral epithelium Moderate Regionally restricted euxassay_006699_08
Specimen euxassay_006699_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart left ventricle Moderate Regionally restricted euxassay_006699_09
TS23: renal calyx Moderate Regionally restricted euxassay_006699_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_09
TS23: vibrissa Weak Regionally restricted euxassay_006699_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_09
TS23: oral epithelium Moderate Regionally restricted euxassay_006699_09
Specimen euxassay_006699_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart left ventricle Moderate Regionally restricted euxassay_006699_10
TS23: renal calyx Moderate Regionally restricted euxassay_006699_10
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_10
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_10
TS23: oral epithelium Weak Regionally restricted euxassay_006699_10
Specimen euxassay_006699_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart left ventricle Moderate Regionally restricted euxassay_006699_11
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_11
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_11
Specimen euxassay_006699_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_006699_12
Specimen euxassay_006699_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_13
TS23: bladder fundus Weak Regionally restricted euxassay_006699_13
TS23: external naris Moderate Regionally restricted euxassay_006699_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_006699_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_006699_13
Specimen euxassay_006699_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_14
TS23: bladder fundus Moderate Regionally restricted euxassay_006699_14
TS23: urethra Moderate Regionally restricted euxassay_006699_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: external naris Moderate Regionally restricted euxassay_006699_14
TS23: posterior naris Moderate Regionally restricted euxassay_006699_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_14
Specimen euxassay_006699_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_15
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_15
TS23: bladder fundus Moderate Regionally restricted euxassay_006699_15
TS23: urethra Moderate Regionally restricted euxassay_006699_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: external naris Weak Regionally restricted euxassay_006699_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_15
Specimen euxassay_006699_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_16
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_006699_16
TS23: urethra Moderate Regionally restricted euxassay_006699_16 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: anterior naris Weak Regionally restricted euxassay_006699_16
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_006699_16
TS23: oral epithelium Moderate Regionally restricted euxassay_006699_16
Specimen euxassay_006699_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_006699_17
TS23: renal calyx Moderate Regionally restricted euxassay_006699_17
TS23: dorsal root ganglion Moderate Single cells euxassay_006699_17
TS23: urethra Moderate Regionally restricted euxassay_006699_17 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006699_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006699_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_006699_17
TS23: lower jaw incisor Strong Regionally restricted euxassay_006699_17
TS23: oral epithelium Moderate Regionally restricted euxassay_006699_17
Specimen euxassay_006699_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart right ventricle Moderate Regionally restricted euxassay_006699_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_18
TS23: renal calyx Moderate Regionally restricted euxassay_006699_18
TS23: anterior naris Weak Regionally restricted euxassay_006699_18
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_18
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006699_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006699_18
TS23: oral epithelium Moderate Regionally restricted euxassay_006699_18
Specimen euxassay_006699_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_19
TS23: facial ganglion Moderate Regionally restricted euxassay_006699_19
TS23: renal calyx Moderate Regionally restricted euxassay_006699_19
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006699_19
TS23: amygdala Present euxassay_006699_19
Specimen euxassay_006699_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_20
TS23: renal calyx Moderate Regionally restricted euxassay_006699_20
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_20
Specimen euxassay_006699_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006699_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_21
Specimen euxassay_006699_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_006699_22
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006699_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006699_22
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_006699_22
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_006699_22
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_006699_22
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_006699_22
TS23: hindlimb digit 5 mesenchyme Weak Regionally restricted euxassay_006699_22
Specimen euxassay_006699_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_006699_23
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_006699_23
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_006699_23
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_006699_23
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_006699_23
TS23: hindlimb digit 5 mesenchyme Weak Regionally restricted euxassay_006699_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory