About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827132
Gene symbol: Pdk1
Gene name: pyruvate dehydrogenase kinase, isoenzyme 1
Probe: MGC clone 28719
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_001737_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_001737_02
Specimen euxassay_001737_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_001737_03
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_001737_03
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_001737_03
TS23: stomach Moderate Regionally restricted euxassay_001737_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_03
Specimen euxassay_001737_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_001737_04
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_001737_04
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_001737_04
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_001737_04
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_001737_04
TS23: vibrissa Weak Regionally restricted euxassay_001737_04
TS23: stomach Moderate Regionally restricted euxassay_001737_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_04
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_04
Specimen euxassay_001737_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_001737_05
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_001737_05
TS23: vibrissa Moderate Regionally restricted euxassay_001737_05
TS23: stomach Moderate Regionally restricted euxassay_001737_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_05
Specimen euxassay_001737_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_001737_06
TS23: stomach Moderate Regionally restricted euxassay_001737_06
TS23: lower jaw molar Moderate Regionally restricted euxassay_001737_06
TS23: upper jaw molar Moderate Regionally restricted euxassay_001737_06
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_06
Specimen euxassay_001737_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_001737_07
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_001737_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_001737_07
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_07
Specimen euxassay_001737_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_001737_08
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_001737_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_001737_08
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_08
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_08
Specimen euxassay_001737_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_001737_09
TS23: midgut Moderate Regionally restricted euxassay_001737_09
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_09
TS23: thymus primordium Weak Regionally restricted euxassay_001737_09
Specimen euxassay_001737_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_001737_10
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_10
TS23: upper jaw incisor Moderate Regionally restricted euxassay_001737_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_001737_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_10
TS23: thymus primordium Weak Regionally restricted euxassay_001737_10
Specimen euxassay_001737_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_001737_11
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_001737_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_001737_11
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_11
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_001737_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_11
TS23: thymus primordium Weak Regionally restricted euxassay_001737_11
Specimen euxassay_001737_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_001737_12
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_001737_12
TS23: hindgut Moderate Regionally restricted euxassay_001737_12
TS23: axial skeleton Moderate Regionally restricted euxassay_001737_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_001737_12
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_12
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_12
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_001737_12
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_001737_12
TS23: urethra Moderate Regionally restricted euxassay_001737_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: rectum Moderate Regionally restricted euxassay_001737_12
TS23: thymus primordium Weak Regionally restricted euxassay_001737_12
Specimen euxassay_001737_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_001737_13
TS23: midgut Moderate Regionally restricted euxassay_001737_13
TS23: hindgut Moderate Regionally restricted euxassay_001737_13
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_13
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_13
TS23: thymus primordium Weak Regionally restricted euxassay_001737_13
Specimen euxassay_001737_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_001737_14
TS23: midgut Moderate Regionally restricted euxassay_001737_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_001737_14
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_14
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_14
Specimen euxassay_001737_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_001737_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_001737_15
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_15
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_001737_15
Specimen euxassay_001737_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_001737_16
TS23: upper jaw molar Moderate Regionally restricted euxassay_001737_16
TS23: lower jaw molar Moderate Regionally restricted euxassay_001737_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_16
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_001737_16
Specimen euxassay_001737_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_17
Specimen euxassay_001737_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_001737_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_001737_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_18
Specimen euxassay_001737_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_001737_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_001737_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001737_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/28/2024
MGI 6.13 		The Jackson Laboratory