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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826672
Gene symbol: Neurod1
Gene name: neurogenic differentiation 1
Probe: DA125 probe 60
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019467_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_01
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_01
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_01
Specimen euxassay_019467_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_02
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_02
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_02
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_02
Specimen euxassay_019467_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_03
TS23: trigeminal ganglion Strong Spotted euxassay_019467_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_03
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_03
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_03
Specimen euxassay_019467_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_04
TS23: trigeminal ganglion Strong Spotted euxassay_019467_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_04
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_04
Specimen euxassay_019467_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_05
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_05
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_05
TS23: pons ventricular layer Strong Regionally restricted euxassay_019467_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_05
Specimen euxassay_019467_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_06
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019467_06
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_019467_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_06
Specimen euxassay_019467_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_07
TS23: glossopharyngeal ganglion Strong Spotted euxassay_019467_07
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_07
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_07
Specimen euxassay_019467_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_08
TS23: glossopharyngeal ganglion Strong Spotted euxassay_019467_08
TS23: dorsal root ganglion Strong Spotted euxassay_019467_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_08
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019467_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019467_08
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_08
Specimen euxassay_019467_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_09
TS23: dorsal root ganglion Strong Spotted euxassay_019467_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_09
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_09
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019467_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_09
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_09
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_09
Specimen euxassay_019467_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Spotted euxassay_019467_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_10
TS23: pancreas Moderate Regionally restricted euxassay_019467_10
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_10
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019467_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019467_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_10
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_10
Specimen euxassay_019467_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Spotted euxassay_019467_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_11
TS23: pituitary gland Strong Regionally restricted euxassay_019467_11
TS23: pancreas Moderate Regionally restricted euxassay_019467_11
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_11
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_11
TS23: pineal primordium Strong Regionally restricted euxassay_019467_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019467_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019467_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_019467_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_11
Specimen euxassay_019467_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vomeronasal organ Strong Regionally restricted euxassay_019467_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_12
TS23: pituitary gland Moderate Regionally restricted euxassay_019467_12
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019467_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_12
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_12
TS23: ventral grey horn Strong Regionally restricted euxassay_019467_12
Specimen euxassay_019467_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vomeronasal organ Strong Regionally restricted euxassay_019467_13
TS23: pituitary gland Strong Regionally restricted euxassay_019467_13
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019467_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_13
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019467_13
TS23: ventral grey horn Strong Regionally restricted euxassay_019467_13
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_13
Specimen euxassay_019467_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_14
TS23: pituitary gland Strong Regionally restricted euxassay_019467_14
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019467_14
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019467_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_14
TS23: ventral grey horn Strong Regionally restricted euxassay_019467_14
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_14
Specimen euxassay_019467_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Spotted euxassay_019467_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_15
TS23: pituitary gland Strong Regionally restricted euxassay_019467_15
TS23: pancreas Strong Regionally restricted euxassay_019467_15
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_15
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019467_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019467_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_15
TS23: ventral grey horn Strong Regionally restricted euxassay_019467_15
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_15
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019467_15
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_15
Specimen euxassay_019467_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Spotted euxassay_019467_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_16
TS23: vomeronasal organ Strong Regionally restricted euxassay_019467_16
TS23: pituitary gland Strong Regionally restricted euxassay_019467_16
TS23: pancreas Strong Regionally restricted euxassay_019467_16
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_16
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019467_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019467_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_16
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_16
TS23: dorsal grey horn Strong Regionally restricted euxassay_019467_16
Specimen euxassay_019467_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_019467_17
TS23: dorsal root ganglion Moderate Spotted euxassay_019467_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_17
TS23: pituitary gland Moderate Regionally restricted euxassay_019467_17
TS23: pancreas Strong Regionally restricted euxassay_019467_17
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_17
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_019467_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_17
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_17
Specimen euxassay_019467_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Spotted euxassay_019467_18
TS23: trigeminal ganglion Moderate Spotted euxassay_019467_18
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_019467_18
TS23: dorsal root ganglion Moderate Spotted euxassay_019467_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_18
TS23: pancreas Moderate Regionally restricted euxassay_019467_18
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_019467_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_18
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019467_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_18
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_019467_18
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019467_18
Specimen euxassay_019467_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_19
TS23: glossopharyngeal ganglion Strong Spotted euxassay_019467_19
TS23: dorsal root ganglion Moderate Spotted euxassay_019467_19
TS23: olfactory epithelium Strong Regionally restricted euxassay_019467_19
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_019467_19
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019467_19
Specimen euxassay_019467_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_20
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_019467_20
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_20
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_20
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_20
Specimen euxassay_019467_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_21
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019467_21
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_21
Specimen euxassay_019467_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Spotted euxassay_019467_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_22
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_22
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019467_22
Specimen euxassay_019467_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_23
TS23: trigeminal ganglion Strong Spotted euxassay_019467_23
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_019467_23
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_23
Specimen euxassay_019467_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019467_24
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019467_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory